Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0399 |
Symbol | |
ID | 4920883 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 448358 |
End bp | 448909 |
Gene Length | 552 bp |
Protein Length | 183 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640161928 |
Product | methylation site containing protein |
Protein accession | YP_001092530 |
Protein GI | 127511333 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.464291 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGACGCTA GCAGAGCCAT CTTACCAAGG CGCGCCTCAG GCTTTACCCT GATCGAATTG GTCGTGGGCA TGATAGTGCT TGGTATCGCC CTGGTCATGC TCACCAGCAT GCTGTTTCCC CAGGCGGATC GCGCCGCCGA AACCCTTCAC AGGGTGCGCT CTGCCGAGCT GGCCCATTCC CTGCTCAATG AGATCTGGGG CAAGCGTTAC GATCAGAACA GCAATCCTAA TGGCGGCGTG CCCGCCTGTG GCGCGGCGGC CAGGCCAGAC CTTGGATTGC CAGCAGGGCT GCCCTGTACA GACCAAGCCA ACTTTGGCCC GGGCGGACTC GATCGCAACG CCTATCGCGA TGTGGATGAC TATCATGGCC TGACCCAGGC CAGCAAGATG CTCAACTCGG ATCGCACCTA TGCTCAGGAA TATATTAACT ACCAACTATC GGTCAGCGTC ACCTATCCCG GCAGCGACAA GAACAGCAAG CTGGTGGCGA TCAATGTGAC CACACCCAGT GGCGAGGTGA TCACCTATAA TGCGCTGCGG AGTAACTACT GA
|
Protein sequence | MDASRAILPR RASGFTLIEL VVGMIVLGIA LVMLTSMLFP QADRAAETLH RVRSAELAHS LLNEIWGKRY DQNSNPNGGV PACGAAARPD LGLPAGLPCT DQANFGPGGL DRNAYRDVDD YHGLTQASKM LNSDRTYAQE YINYQLSVSV TYPGSDKNSK LVAINVTTPS GEVITYNALR SNY
|
| |