Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0336 |
Symbol | |
ID | 4920846 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 381590 |
End bp | 382513 |
Gene Length | 924 bp |
Protein Length | 307 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640161864 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001092467 |
Protein GI | 127511270 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGGTCA ATGATCTATT GTTATTTGTA AGGGTCGCCG ACTGCGGCAG CCTGAGCGGC GCGGCGGTGG AGTTGGAGAT CTCCGCGGCG GTGGCCAGCG CCAGCCTGAA GCGGCTGGAG AAGGAGCTAG ATACCGTGCT CTTCATCCGC AGCACCCGCA GCCTGAGGCT GACCGACGCC GGTGAGCGTT ACCTCAGCTA TTGTCGTCGG GCGCTGGAGG ACCTGCGTCT CGGTGAGCAG GCGCTGGCCT GCGCCAAGTC GCAGATTGCC GGCAAGTTGA GTGTAGCCCT GCCGTCCGAT GCCGGGCGTA ACTATATTCT GCCCTGGCTG GATCATCTGA TGGACGAATA TCCCAGGTTA CAGCTGAGGC TGCATCTCGC CGACAGCCTG ACCAACTTCT ATCACGACAA GATAGATGTT GCCCTGCGAA GCGGCACCCC AAAGGATTCT AGCCTGGTGG CCTTTAAGAT CTGCTCGGCC CAGCGCATCC TGTGTGCCTC GCCCGAGTAT ATTGCTGTCC ATGGTCGCCC CGAAACCCTA AGCGATCTAG AGAAGCATAA CTGCTTGTTT TTCATGTTAG ATGAGAAGAC CCACGACCAA TGGTGTTTCT ATCGCGACGG TCAGAGTCAC AGGGTGAGGG TGTCGGGCAA TCGCACCTGT AACGACGCCG AAGTCGCCCG CAAGTGGGCG TTGGCGGGCA AGGGGATCGT CTACAAGTCA TCCCTAGATC TGGCGGATGA CCTGGCCAGC GGCGCCCTGG TGCCGCTACT GACCCAGTAC AGCGGCGAGA GCGCCGATCT CTATCTTGTG TGCCCCGGGC GCCAACATGT GACGCCTCTG GTGCTGACCC TGAGGGAGCA TCTGCGCCAG CGCTGCCAGC AGCGCGCCAA GCGCCTCGCC GCGGCTTTTA CTCAGCAGGC ATAA
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Protein sequence | MQVNDLLLFV RVADCGSLSG AAVELEISAA VASASLKRLE KELDTVLFIR STRSLRLTDA GERYLSYCRR ALEDLRLGEQ ALACAKSQIA GKLSVALPSD AGRNYILPWL DHLMDEYPRL QLRLHLADSL TNFYHDKIDV ALRSGTPKDS SLVAFKICSA QRILCASPEY IAVHGRPETL SDLEKHNCLF FMLDEKTHDQ WCFYRDGQSH RVRVSGNRTC NDAEVARKWA LAGKGIVYKS SLDLADDLAS GALVPLLTQY SGESADLYLV CPGRQHVTPL VLTLREHLRQ RCQQRAKRLA AAFTQQA
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