| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0209 |
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| Symbol | |
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| ID | 4923645 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 224781 |
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| End bp | 225362 |
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| Gene Length | 582 bp |
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| Protein Length | 193 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640161732 |
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| Product | fimbrial assembly family protein |
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| Protein accession | YP_001092340 |
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| Protein GI | 127511143 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3166] Tfp pilus assembly protein PilN |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0930863 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00864112 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCGAACA TAAACTTATT GCCCTGGCGC GAAGAAGCAA GAGAAAAACA AAAACGCGAT
TATCTGGGCA TATTAGCTGC TGTATTTATC GGCGCGGCAT TAGTCGTTTA TTTAGCCTTA
ACGGTTCTCG ATATGATGAC CGAGGAGCAG AGAGGTAGAA ATGCCTATCT GCAGGGTGAA
ATTCAGCTGT TAGAAAAACA AATTGCCGAA ATTAAAAAGA TTCGTGAGCG TAAGAAAGAT
ATCGAGCGTC GTACCGAGAT CATATTAAAC CTGCAACAGG CAAGAAACTT ACCCACCCAT
GTATTGGATG AGTTGGTGCG TGTCGTACCG CCGGGAATAT ATCTTTCCAG CATCGAAAAG
AAGGGCAGCT TGCTGTGGAT CCAGGGACGT AGTGAGTCTA ACAACAACGT CGCCAACATG
ATGCGCAAGA TCAAGGCCTC AATGTGGTTA CACGATCCCA ACATGCAGTC GATCGTCTCG
CAGAATGATG AGATGCGTCA GCTACAGCGT TTCAGTTTAA GGGTCTCTAT CGGTGAAGAA
GATGCAGATA ATGCCAAAGC GACACAAGGA GCGAGCAAAT GA
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| Protein sequence | MANINLLPWR EEAREKQKRD YLGILAAVFI GAALVVYLAL TVLDMMTEEQ RGRNAYLQGE
IQLLEKQIAE IKKIRERKKD IERRTEIILN LQQARNLPTH VLDELVRVVP PGIYLSSIEK
KGSLLWIQGR SESNNNVANM MRKIKASMWL HDPNMQSIVS QNDEMRQLQR FSLRVSIGEE
DADNAKATQG ASK
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