| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0188 |
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| Symbol | |
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| ID | 4921839 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 194687 |
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| End bp | 195433 |
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| Gene Length | 747 bp |
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| Protein Length | 248 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640161707 |
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| Product | heme exporter protein CcmC |
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| Protein accession | YP_001092319 |
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| Protein GI | 127511122 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0755] ABC-type transport system involved in cytochrome c biogenesis, permease component |
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| TIGRFAM ID | [TIGR01191] heme exporter protein CcmC |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000216474 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00157389 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGTGGAAAT GGCTACATTC TTACGCAGAC CCTCAAAAAG CCTATAACCT CTCTGGCAGG
CTATTGCCTT GGTTTGCGAC GCTTGCAATC GCGTTTATTG GTGTGGGTTC TATCTGGGGT
CTGTTGTTTG CGCCGGTAGA TTACCAGCAG GGTGACAGTT ACCGCATCAT CTTTATCCAC
GTACCCGCGG CTTCTATGTC GATGTCGGCC TACATGGCGA TGGCAACCTC GGCCTTTATC
GGCCTAGTAT GGCAGATTAA GTCTGCCGAC TGGGCGGCAG CGGCCATTGC GCCTATCGGT
GCGGTCGTTA CCTTTATCGC CCTCATCACG GGTGCTGCCT GGGGCAAGCC TATGTGGGGC
ACCTGGTGGG TGTGGGACGC TCGCCTGACA TCAGAACTTG TGTTGCTGTT CCTCTACCTG
GGTGTGATCT CTCTGTACGC CTCTTTCGAA GATAAGGTAC TCGCCGCTCG TGCCGCCGGC
ATTCTGGCCA TCGTGGGCGT GATCAACATT CCTATCATCA AGTACTCGGT AGAGTGGTGG
AACTCACTAC ACCAGCCTGC GACCATCAAG ATCACCGAGA AGTCATCTAT GGCACCTGAG
ATGTTATATC CACTGCTGAT CAACATCTTC GGTTTCGGCC TGATGATAGG CGCTATCACG
CTTATTCGTT TCAGAGCCGA GATACTTGCC AGAAACGGTA TGCGTCCCTG GGTCAGGGAA
CTCGCGCAAG CTGAAGGAGT CAAATAA
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| Protein sequence | MWKWLHSYAD PQKAYNLSGR LLPWFATLAI AFIGVGSIWG LLFAPVDYQQ GDSYRIIFIH
VPAASMSMSA YMAMATSAFI GLVWQIKSAD WAAAAIAPIG AVVTFIALIT GAAWGKPMWG
TWWVWDARLT SELVLLFLYL GVISLYASFE DKVLAARAAG ILAIVGVINI PIIKYSVEWW
NSLHQPATIK ITEKSSMAPE MLYPLLINIF GFGLMIGAIT LIRFRAEILA RNGMRPWVRE
LAQAEGVK
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