| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0187 |
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| Symbol | |
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| ID | 4921045 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 194487 |
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| End bp | 194687 |
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| Gene Length | 201 bp |
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| Protein Length | 66 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640161706 |
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| Product | Heme exporter protein D (CcmD) |
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| Protein accession | YP_001092318 |
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| Protein GI | 127511121 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3114] Heme exporter protein D |
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| TIGRFAM ID | [TIGR03141] heme exporter protein CcmD |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0000124627 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00139389 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGCAGTTCG ATTCATTAGC AGATTTTTTT AACATGGGTG GCTACGCCTT TTATGTGTGG
CTATCTTACG GCATAACCGC CTTCGCACTG GGTACCTTAA TCGTGGTGAG CCTGCGCCAG
AAGCGCAAGA TCCTTACCGA GATATCCAAG AAGATGCAAC GCGAAGAACG CCTCAAAGCC
AACCGGAGTA AAGAACAGTG A
|
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| Protein sequence | MQFDSLADFF NMGGYAFYVW LSYGITAFAL GTLIVVSLRQ KRKILTEISK KMQREERLKA
NRSKEQ
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