Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0079 |
Symbol | |
ID | 4923960 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 91853 |
End bp | 93310 |
Gene Length | 1458 bp |
Protein Length | 485 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640161590 |
Product | TAP domain-containing protein |
Protein accession | YP_001092210 |
Protein GI | 127511013 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCTGA CACACAAGCC CAATCTATTG GCCTTTGGCA CACTCGTCAT GGCAACCGCC CTCCTCGGCG GCTGTAACCA ATCGAGCAAG TCTGACACTA AGAAGGAGGT CACCAGCAAG GTGGGCACTT ACGCCAGCGT CGACTGCAGT ACGTTCACCA AGAGTAAGGA TCTGCCCAAA GGCGCCAGCT GCGGCTATCT GACGGTCCCG GAAAAACACG CCATCAAGGG CCAGAGTGCC TCCAAGAAAA CCATGGAGAT CGCCGTGCTG AAGATCCCGG CGACCAAGAC TGAGGCCAAG GCCGATCCCG TGGTCTACCT GCAGGGCGGT CCAGGCTACT CGGCCATCGA CAGCCTGGAA GACTTCACCC AGAGCAAGGC GAAATACCTC TGGAACGACC GCGACTTCTA TCTGGTGGAT CAGCGCGGCA CAGGCCACGC CAAGCCCGCC TACAAGTGCA CCGAATTTAA CACGGTCAAG GGCTCAATCG AGCAGGTCAA GGCCTGTAAG GCTCGCCTCA AGGCCAAGGG CGTCGACTTC AGCGCCTATC AAAGTGTGCA GAGCGCCCAC GACTTCATCA TGCTGAGAAA GGCGCTCAAG CTCGACAGCT GGAATCTCTA CGGCGCCTCG TACGGCACCC GCTTAGCTGA GACCATCATA CGCGAAGATA GCCAAGGGGT TCGTAGCGTC ATCCTTGACG GAGTATTCCC CATCGAGGTC AACGGCCTGT CAGATACGCC CTGGGCCACC TATGCCACGC TGGATCGCAT CGTCGCCAAC TGCGATGCCT CGATTAATTG TGCATCAGAG ATCCTCAAGC CGATGATCGA GTCCATCATC GAGCGACTAC AGAATCAGGG GGAGGAGCAG GCAGCCATCC GTTTCGTCAA CTACATCGCC AGTCTAGCGG GTGATGCCAG GGTCGTCCCC CTGATACTGG CGATCGACAA GGACCTGAAC ATCATCATCA ATGAGAAAGA CAACGAAGAG GCCGAAGGCT ACTTTGCCCC TATGGCCCTG TCAGTGGTCT GCGCCGAGGA ATATGCCTTC CTCAACCAGA CGGCTCTAGA GGGTCGCAAC GACAAGAACT GGTCCACCAC GACCACACTG ACAGTGAACA AGATGTTCCA TGAGGGATTC GATATCGACA GCTGTAAGGC GTGGGATGTG GCCGCGGCCG ACAGCATAGA GACCCAGGCC GTCACCAGTA ATCTGCCGAT CCTGGTGATC AACGGTGGTA ACGATCATCA GACGCCACCG GCATGGGGTG AGTTAGTGGT GAAGAACATG CCTAATGCCC AGCTGTTCAC CAACCCTCAG GGTGGCCACG TACAGCTGAC CTCACAGAAC CCTTATCGCA ACTGTATTGA CGGCATCACC ATGGCCTTCC TGGCGGCGCC AGATCAGAAG ATCAAGACCC AGTGCACCAG CATGATCCCG GTATTTAAAT ACAACTAA
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Protein sequence | MSLTHKPNLL AFGTLVMATA LLGGCNQSSK SDTKKEVTSK VGTYASVDCS TFTKSKDLPK GASCGYLTVP EKHAIKGQSA SKKTMEIAVL KIPATKTEAK ADPVVYLQGG PGYSAIDSLE DFTQSKAKYL WNDRDFYLVD QRGTGHAKPA YKCTEFNTVK GSIEQVKACK ARLKAKGVDF SAYQSVQSAH DFIMLRKALK LDSWNLYGAS YGTRLAETII REDSQGVRSV ILDGVFPIEV NGLSDTPWAT YATLDRIVAN CDASINCASE ILKPMIESII ERLQNQGEEQ AAIRFVNYIA SLAGDARVVP LILAIDKDLN IIINEKDNEE AEGYFAPMAL SVVCAEEYAF LNQTALEGRN DKNWSTTTTL TVNKMFHEGF DIDSCKAWDV AAADSIETQA VTSNLPILVI NGGNDHQTPP AWGELVVKNM PNAQLFTNPQ GGHVQLTSQN PYRNCIDGIT MAFLAAPDQK IKTQCTSMIP VFKYN
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