| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0065 |
|---|
| Symbol | |
|---|
| ID | 4923003 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 78618 |
|---|
| End bp | 79610 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640161577 |
|---|
| Product | formate dehydrogenase, gamma subunit |
|---|
| Protein accession | YP_001092197 |
|---|
| Protein GI | 127511000 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2864] Cytochrome b subunit of formate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01583] formate dehydrogenase, gamma subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAAT GGTTCAAACA ATTTAGCGTG ATCTTAGCGC TAGTGATAGG TACCACCTTC
AGTGCCCTGT CGTTCGCCCA TGGCGACGCG ACCGACCATA CCCATGCCGC CACCGAGGGG
CAGATCTGGT CTGAGATTCA GGCGGGTGCT ACCGGATACA CTACCTCTCA CGGTCAGTTC
CACAACCAGC CGATCAACAG CTATGATCTG CGGGTACTCG AACTTCGCAG CGACTGGCTG
GCACCAGCCC TGATGGCGGC GCTGTTTGGC ATGATCATCA TCTTCGTGCT GTTCATCAAG
GTGAACGGTA TCTCCAAGTT GCATCACGGC TTCTCGGGCA AGATGGTGTA TCGCTGGTCG
AAATTTGATG TCTCTATCCA CTGGTTGGGG GCGATCCCTT GTCTGCTGCT GATCCTCACG
GGTCTGACGT TGCTGGCGGG ACGTTTCTTC TTCCAGCCAT ACCTAGGTGA AGGCTTCTGG
GCCGGTCTGG TCTATGGTGC CAAGCAGATC CACGACTACA TGGCGATCCC CTTCATGATT
GGTTGGGCGC TGATGACCAC GCTGTGGGCC AAGAATCAGC TGCCTAAGAT GTATGATGTT
AAATGGTTCC TGGTCGTTGG TGGTTACATC AACTTCGGTC CCTTCAAGGG TAAGCACCCG
GATGCAGGCT TTGCCAACGC CGGTGAGAAG ATGTGGTTCT GGGCCTTTGC CTTCTTTGGA
CTGATCATCT CGGCTTCTGG CATGTTGCTG CTGTTCCCGA ACCTGTTCGA GCCTAGCCGC
ACCCTGAGCC TGATCGCCCT GGTACTTCAC TCTGTCAGTG CCATCGTTAT CTGCGCCTTC
TCTATCGTAC ATATCTTCAT GGCGACCGTG ATGTCAGAAG GTGGTATGGA GTGTATGGTG
TCGGGTTACT GTGATGAAAA CTGGGCGACT CAGCATCACA ACCTTTGGTA TGACGAGATC
AAGGCCAACG GCACGCTGAA GTACAAAGCG TAA
|
|---|
| Protein sequence | MNKWFKQFSV ILALVIGTTF SALSFAHGDA TDHTHAATEG QIWSEIQAGA TGYTTSHGQF
HNQPINSYDL RVLELRSDWL APALMAALFG MIIIFVLFIK VNGISKLHHG FSGKMVYRWS
KFDVSIHWLG AIPCLLLILT GLTLLAGRFF FQPYLGEGFW AGLVYGAKQI HDYMAIPFMI
GWALMTTLWA KNQLPKMYDV KWFLVVGGYI NFGPFKGKHP DAGFANAGEK MWFWAFAFFG
LIISASGMLL LFPNLFEPSR TLSLIALVLH SVSAIVICAF SIVHIFMATV MSEGGMECMV
SGYCDENWAT QHHNLWYDEI KANGTLKYKA
|
|---|
| |