| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_4438 |
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| Symbol | |
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| ID | 5369289 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009661 |
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| Strand | - |
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| Start bp | 58793 |
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| End bp | 59530 |
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| Gene Length | 738 bp |
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| Protein Length | 245 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640819234 |
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| Product | Type-F conjugative transfer system pilin assembly protein TrbC |
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| Protein accession | YP_001355456 |
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| Protein GI | 152998535 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02742] type-F conjugative transfer system pilin assembly protein TrbC |
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Plasmid Coverage information |
| Num covering plasmid clones | 79 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAGT TTGAGACCAA ATTACCAACA ATCTATACCG AGTTATGCAC AAAAATTGTG
CATAACTCTC TATTTTCACA ACCATTCAAG GGATTAGCCT TACTGCTGAG CTTATACCTT
GGATCAATTT CACAGGTATT CGCCCAAACG GATTACAGTA TTGACGAATT AAAAGCGCTG
TCGATGCGAG AACGTCACAC ATTACCCCCA TTGAATGGTG ACCAAGCCGC ACTATTTGAT
AATGCCCGTC AGTTCGAAGC GCAAAGCAAA AGCCAATTAG ACAACGCACT ATCACCATTG
CTCGATGCAA AGCCCAACCC CAGTGCCGAT GCTAATGGTG TGATGGTATT TGTGTCGTTG
GGTATGCCTG CGACCAGTTT GCAGCAGTTA CTCATGCAAA GCGCAGACTT ACAGGTGCCA
CTCATTGTGC GCGGTGTACT GCCGCAAGGC TTTACCGCCA CCGTTAAACA GATGAATCAC
CTTATCGATA ACAAGGGTAA AACCATACAG AGCGGTTTTG CGATTAATCC CCAGTGGTTT
ACGCAATTCG GCATTACCCA AGTACCCGCC TTTGTTGCGG TAAGACCCAA CAAATGTCAG
GCAAAACAGC CCTGCAGCAG CGATGACTTT GACGTGATTT ACGGCAACGT TTCGTTGTAT
GACGCGCTGA ACTTACTTGC ACAACACGGC AGCATTCCCG ATGTGGCGGC GAAGACATTA
GCAAAGGGGG CGAAATGA
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| Protein sequence | MKKFETKLPT IYTELCTKIV HNSLFSQPFK GLALLLSLYL GSISQVFAQT DYSIDELKAL
SMRERHTLPP LNGDQAALFD NARQFEAQSK SQLDNALSPL LDAKPNPSAD ANGVMVFVSL
GMPATSLQQL LMQSADLQVP LIVRGVLPQG FTATVKQMNH LIDNKGKTIQ SGFAINPQWF
TQFGITQVPA FVAVRPNKCQ AKQPCSSDDF DVIYGNVSLY DALNLLAQHG SIPDVAAKTL
AKGAK
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