Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_3843 |
Symbol | |
ID | 5373616 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | - |
Start bp | 4560755 |
End bp | 4561813 |
Gene Length | 1059 bp |
Protein Length | 352 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640832104 |
Product | secretion protein HlyD family protein |
Protein accession | YP_001368030 |
Protein GI | 153002349 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCAAAA GTAAACTCAT TATCGCCGTT CCACTGTTAC TCGCTGCGGT TGCGGGAGGC GGTTATTACT GGTGGACACA GGTACGTTTT ATCGAAACCA CTGATAACGC TTATGTTGAG GCCGATATTT CCCATATCAG CGTTAAAGTA CCCGGCTACG TCGTGTTAAG CGATGTGACC GATAACCAGC ATGTGCAAAA GGGTGAGCTA TTAGCTCAGC TCGAAGATAA CCAATTTAGC GCCAAAGTGA GTCAAGCCGA AGCCTCACTG GCAAGTTCGA AGGCGGACTT GCAAACCTTA GCCGCTAAGG TTGAGTTACA ACGGGCGTTA ATCACCCAAG CCAGTGCCGG TGTCGTGGCG GCTGAGTCCG ATAAAATACG TGCACAGCAA CAATTGAGCC GCTCGAAAAA GCTTAAAGTC AGTAATTACA GCTCCCAAGA TGATGTCGAT CAACTGCAAG CGGGATTCGA TTCTGCCGCC GCCCGCCTCG ATGAAGCCAA AGCCGTGTTA GTGGCAAAGC AACGCGAGTT AGCGGTTTTT AATGCCCAAT TAGATCAGGC GGGTTCTGTG GTAGAACAGG CCGATGCGAC CTTAGAATTG GCGAAAATTC AATTAAATGA TACCCGTGTG ACCGCACCTT TTTCTGGGGT GATTGGTAAA CGTGGCGCTA TGGTGGGGCA GTACGTGCAA CCCGGCCAAG CACTCTACAG TTTGGTTCCG GATGGGGCAG TGTGGATCAC GGCGAACTTT AAAGAGACCC AGATCCAACA CATGCAACCA GGACAGTCGG TGCAGGTCAG TCTCGATGCG TTTCCCGACA AAACCTTTAT AGGTGTTATC GATAGTCTGT CACCGGCGTC CGGAGCCAAA TTTAGTCTAT TGCCTGCGGA AAATGCTACA GGTAACTTCA CTAAAATCGT CCAACGTATT CCCGTGCGTA TTCGCTTAGA TTTGTCTGAG GAAGAAGCAC ACATGCTACC GGGCTTAAGT GCGGTTGTGA AAGTGGATAC GGCGTCGGGT ACTGCAATAT CGGCAATCGC TGCAAATACA GGTCGTTAG
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Protein sequence | MSKSKLIIAV PLLLAAVAGG GYYWWTQVRF IETTDNAYVE ADISHISVKV PGYVVLSDVT DNQHVQKGEL LAQLEDNQFS AKVSQAEASL ASSKADLQTL AAKVELQRAL ITQASAGVVA AESDKIRAQQ QLSRSKKLKV SNYSSQDDVD QLQAGFDSAA ARLDEAKAVL VAKQRELAVF NAQLDQAGSV VEQADATLEL AKIQLNDTRV TAPFSGVIGK RGAMVGQYVQ PGQALYSLVP DGAVWITANF KETQIQHMQP GQSVQVSLDA FPDKTFIGVI DSLSPASGAK FSLLPAENAT GNFTKIVQRI PVRIRLDLSE EEAHMLPGLS AVVKVDTASG TAISAIAANT GR
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