| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_2191 |
|---|
| Symbol | |
|---|
| ID | 5371174 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 2609537 |
|---|
| End bp | 2610571 |
|---|
| Gene Length | 1035 bp |
|---|
| Protein Length | 344 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640830404 |
|---|
| Product | transcriptional factor MdcH |
|---|
| Protein accession | YP_001366394 |
|---|
| Protein GI | 153000713 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2378] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.073233 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGCAA ATAAAAATGC AAACACGCTT CTCAGGCAAC AAACACTGCT TAAGTTTATT
CCCACAGATA AAGGGATAAG AAGCACCGAA CTATTAGAGT TGATTGCTAA TGAAGGTTTT
AACGTTAGCC ACCGAACCTT GCAAAGAGAC TTAGTTGTAC TATCACAGTA TTTTCCCATT
TATTCAGAAA CCGAGGAGAA ACCCTATCTG TGGCGCAGCA CAGAATTGAG TGGCTTACGG
GCTCATATCG ATACTATAAG TTTGACGGAT GCTTTGTCGC TGATGTTGGT TGAAAAATCG
CTAAAGAAAC TGTTGCCACC GGCGATGCAA CGACATTTAC AAAACAATTT TGAGCATTCT
CGCCAGCTAT TAAATACCTT AAAAGATGAC TATAACGCCC AGTGGTTAGA TAAAGTTGCG
AGTGTAATGC CTGATATGGG ATTTAAACCC CCAGTAATCA ACGAAACACT GTTAAAAGAA
ATACAAGAAG CTTTATTGAG GGATCAAACT ATTCGAACTC ACTATCAGGC AAAGCAAAAG
GTCGGGGCGA TTGAATACCA CCTTATGCCG CTTGCCTTAG TGCAACGTGG GGACGTGCTT
TACCTGATTG CTCAAGATAT AACAAAAGGG TATGAGAATG CCGCCGTAAA GCGCTTCGCA
ATGCACCGTT TTCAAACGGT AAAACGCACC TACGAGCAAG GTATGCGTCC AGCGGACTTC
AATTTACAGC AATACATACA AGACGGTGCA ATGCACTTCT CTAACGGCGA AACCCTAAAG
CTTAAAGCTA AGGTCACCGC AGAGTTAGCA TTTTATCTCA CCGAAAGCCC TATGTCTGAC
GATATGGTAT TAATGCCTTT AGACGAGCAC TTTTATGAAC TGACAGCAAC AGTTCACAAT
AGTTGGCAAT TGAACTGGTG GTTAAAAGGA CAGGGCGCAA ATATAGCGGT ACTCGAACCG
CAATCGCTTC GAACTCAACT TAGTGACAGC TTGCGTAAAG CACTTGAAGC TTATACAAGT
CAAAACTCTG ATTAA
|
|---|
| Protein sequence | MSANKNANTL LRQQTLLKFI PTDKGIRSTE LLELIANEGF NVSHRTLQRD LVVLSQYFPI
YSETEEKPYL WRSTELSGLR AHIDTISLTD ALSLMLVEKS LKKLLPPAMQ RHLQNNFEHS
RQLLNTLKDD YNAQWLDKVA SVMPDMGFKP PVINETLLKE IQEALLRDQT IRTHYQAKQK
VGAIEYHLMP LALVQRGDVL YLIAQDITKG YENAAVKRFA MHRFQTVKRT YEQGMRPADF
NLQQYIQDGA MHFSNGETLK LKAKVTAELA FYLTESPMSD DMVLMPLDEH FYELTATVHN
SWQLNWWLKG QGANIAVLEP QSLRTQLSDS LRKALEAYTS QNSD
|
|---|
| |