| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_0223 |
|---|
| Symbol | |
|---|
| ID | 5372511 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 259687 |
|---|
| End bp | 260694 |
|---|
| Gene Length | 1008 bp |
|---|
| Protein Length | 335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640828420 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001364457 |
|---|
| Protein GI | 152998776 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2984] ABC-type uncharacterized transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.016326 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTCAAA TAACACCATT AAACATAAAC TTGCTTTGTG TTGCCCTACT CTTATGCCTT
GTGAGTCTCT CGCAGAACGC CAATGCAGCT AAAGTGATCG TGATCGAAAG CTATCACCAT
GGATATCAAT GGGACCAAGA ATACTACCGA GCGATTAATG ACACGCTTAG CCCCCTGCAC
GATGTGAGTT ATTTCGAAAT GGATACCAAG CGTTTACCAA AGGAGCAATT TGCCGAAAGA
GCTGATTTAG CGTGGAAGTA CATCCAAAAC CAAGCACCTC AACTGGTTAT TCTCGCCGAT
GATAATGCGG TTAACCTGTT ACATCAGCGC CTCAATGACA GCTTAATCCC AGTGATCTAT
CTTGGGGTGA ATATGAACCC TAGAGAGTAT CATCTCAATG AGCACAAGCG ATTTACCGGT
GTCATAGAAA GGCCGCTGCT ACGACGCTCA CTCCTCCTCA TTCAACGCTT ACTCCCACAG
ACTGTGCACC GCAAAATACT AGTCCTATTT GACCAAGGTG TTACCTCAGA CTCCGCTGCA
GAATACATCA GCAAACAACA CTCAAGTATT TTGGGCGATA TCGAAGTGAA TTTGGTGCAA
TTGTCACAGC TCGCAGATTG GCAGCAACAG GTACTGACGG CGAAGGAGCA AGGCTATAAC
GCCATTGTCG TGGCGCTCCA CCAAACAGTG AGGGATGCAG AAAATCGTTC TGTGAATGCG
GATCAGCTCC TCAAATGGAT ATCAGAACAT ACACCGGTAC CGAATTTCGG ATTTTGGGGA
TTTAGCGTCT CCTCCGAGGG CAATATTGGA GGCTACGTAC TCGATGGCTA TCATCATGGC
GAAATAGCAG CGAATATGGC GTTAAAAATA CTGGCTGGCG AGAAACCGGA AAACATCTTT
CCAGTGACAG ATGATCTTGG GAAATACATG TTTAGTCAGC AAGGTTTGGC CAAATGGAAT
ATTAGCCTAC CGAAAGAAAT CGAGAAAAAT ACACTCTGGG TGAAGTAA
|
|---|
| Protein sequence | MIQITPLNIN LLCVALLLCL VSLSQNANAA KVIVIESYHH GYQWDQEYYR AINDTLSPLH
DVSYFEMDTK RLPKEQFAER ADLAWKYIQN QAPQLVILAD DNAVNLLHQR LNDSLIPVIY
LGVNMNPREY HLNEHKRFTG VIERPLLRRS LLLIQRLLPQ TVHRKILVLF DQGVTSDSAA
EYISKQHSSI LGDIEVNLVQ LSQLADWQQQ VLTAKEQGYN AIVVALHQTV RDAENRSVNA
DQLLKWISEH TPVPNFGFWG FSVSSEGNIG GYVLDGYHHG EIAANMALKI LAGEKPENIF
PVTDDLGKYM FSQQGLAKWN ISLPKEIEKN TLWVK
|
|---|
| |