| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_0104 |
|---|
| Symbol | |
|---|
| ID | 5369558 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 127138 |
|---|
| End bp | 128568 |
|---|
| Gene Length | 1431 bp |
|---|
| Protein Length | 476 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640828291 |
|---|
| Product | selenocysteine synthase |
|---|
| Protein accession | YP_001364338 |
|---|
| Protein GI | 152998657 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1921] Selenocysteine synthase [seryl-tRNASer selenium transferase] |
|---|
| TIGRFAM ID | [TIGR00474] seryl-tRNA(sec) selenium transferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACACAGA TGATGACCCA AGCACCCGAA ACGCCACAAG CCTTGTACCG CGCTTTGCCC
TCAATGGACA GCTTACTGGC GGAGCCTAGC TTTGTGGTAT TGCAGCAGTC TTACGGCAAA
GTGGCAGTAA AGACGGCGCT GGATAGCCAG TTAAAGGCGG CGCGAAGCTT AATTAGCAGT
GAGCGCCGTT TGCCGACATG GTGTGGCGAG CTTGCGCAAT TGCACGGATG TTTGGTTGAT
CAACTGTCTA AAGATTACAG CCACAGCTTA ATACCTGTGT GGAATCTTAC TGGCACCATA
CTGCATACCA ACCTTGGCCG AGCGCAGCAG TCAGAAGCGG CAATTCGAGC CGTGACTTCT
GTTATGCGCT ACCCCACACC GCTGGAGTTT GAGCTTGCGG CAGGTGAACG TGGTCACAGG
GATAATGCAA TCAGTGCTTT AATCCAGCGC TTAACGGGTG CCGAGGCTTG TTGTGTCGTG
AATAACAATG CCGCAGCTGT GTTGTTGATG CTGTCAGCTG TGGCTGCGGG GAAAGAAGTC
ATAGTCTCCC GTGGTGAGTT GGTGGAAATT GGCGGCGCGT TTCGCATCCC TGACATTATG
CGCCAAGCGG GCTGCACCTT AGTCGAGGTC GGCAGCACCA ATCGGACTCA CCTTAAGGAT
TATGAGCAGG CGATTACTGA AAATACCGCT GCAATAATGA AGGTCCACAC CAGTAATTAT
CATATTAGTG GTTTTACTGC CGCAGTGGAG GAGGCAAGGC TGGGTCAGTT ATGCCGTGAG
CGTGGCATAT CACTCATTTC GGATCTTGGT AGTGGCTCAC TGACGGACTT GCGCCGCTTT
GGCCTAAAAC AAGAACCTAC GCCCCAAGCC ATGCTGGCTG ATGGGGTCGA TTTAGTGAGT
TTTTCTGGCG ACAAATTATT GGGCGGTCCT CAATCGGGTT TAATTGTCGG CAAACAGTCG
CTGATTAAGC AGTTACAGAG TCATCCACTA AAGCGGGCCC TACGTTGCGA TAAGCTGATT
TTGGCGGCGT TAGAGGCAAC ATTGATCCAC TATCTTAACC CTGAAACCTT AGACTCTGAG
CTGCCCATTA TGGCGAAATT TGCCCGTAGC CAAGAGACGT TATGGCAGAT TGGTCATCGC
TTACAGCAAG CTTTGGTTCC ACACTTTGAA CCTTGTTATC GTATTGAGTT AATTGAGTGC
CAAACACAGG TCGGCAGTGG CTCGCAGCCC GATACTTTTT TACCCTCAGT GGCGCTGTGT
TTTATCGCAC TCGATGGCGG CAGTTTAAGT TTGTTAGAAC AAAAATTTAA GCAGGCGGCA
CGCCCTATCA TAGGTCGCAT GAGTAACGAT CAACTCAGAT TGGATTTACG CGGTCTTGAT
AGCGAAGCCG AGCTACTCGC CGAGCTGAGC ATATTAGGTG TGCAGTTGTG A
|
|---|
| Protein sequence | MTQMMTQAPE TPQALYRALP SMDSLLAEPS FVVLQQSYGK VAVKTALDSQ LKAARSLISS
ERRLPTWCGE LAQLHGCLVD QLSKDYSHSL IPVWNLTGTI LHTNLGRAQQ SEAAIRAVTS
VMRYPTPLEF ELAAGERGHR DNAISALIQR LTGAEACCVV NNNAAAVLLM LSAVAAGKEV
IVSRGELVEI GGAFRIPDIM RQAGCTLVEV GSTNRTHLKD YEQAITENTA AIMKVHTSNY
HISGFTAAVE EARLGQLCRE RGISLISDLG SGSLTDLRRF GLKQEPTPQA MLADGVDLVS
FSGDKLLGGP QSGLIVGKQS LIKQLQSHPL KRALRCDKLI LAALEATLIH YLNPETLDSE
LPIMAKFARS QETLWQIGHR LQQALVPHFE PCYRIELIEC QTQVGSGSQP DTFLPSVALC
FIALDGGSLS LLEQKFKQAA RPIIGRMSND QLRLDLRGLD SEAELLAELS ILGVQL
|
|---|
| |