Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_28170 |
Symbol | |
ID | 8396705 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | - |
Start bp | 3121253 |
End bp | 3122143 |
Gene Length | 891 bp |
Protein Length | 296 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 644987556 |
Product | dihydrodipicolinate synthase |
Protein accession | YP_003145156 |
Protein GI | 257065484 |
COG category | [E] Amino acid transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
TIGRFAM ID | [TIGR00674] dihydrodipicolinate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00641704 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATATCA AGAACCTGCA AGGCTCCATC GTCGCCCTCG TCACCCCGTT CAACGAGGAC GGATCCGTCG ACTTCGACGC CCTGGCCGGG CTTATCGACT TCCATCTGGA AAAGGGCACC GACTCCATCC TGGTGCTGGG CACCACCGGC GAGTCCTCCA CCATGTCCCA TGAGGAAGAC GACGCGGTGT GCGACTTCAC CGTCAAGCGC GTGGCTGGCC GCGTGCCCGT TATCGCGGGT TCCGGCTCCA ACGATACCGA GACCATGCGC ATGAAGAGCC TCAGCTACCA GAAGCTAGGC GCCGACGGTC TGCTGGTCAT CACCCCGTAT TACAACAAGT CCAACGAAGA GGGCATCTAC CAGCACTTCA AGACCGTTCT TGATGCGGTG GAAATCCCCT GCATCCTGTA CAACGTGCCT AGCCGCACCG GTTGCAGCAT CTCCGAGAAC AACGTGAAGC GCCTGGCCCA GCACCCCAAC GCCCTGGGTA TCAAGGAGGC TTCGGGCTCC ATCGCGTATG CCACCAACAT CGCCCGCTAC CTGAGCGACG ACTTCTTCAT GTTCTCCGGC AACGACGACA TGGTCATTCC GCTGATGTCC CTGGGCGCCC GCGGCGTCAT CTCTGTGTGG GCGAACGTGG ATCCGGCCGC CGTGCACAAC ATGACCACTG CGTATCTGGA AGGCCGCCAC GACGAGGCTC TGAAGATTCA GCTGGACAAC CTGGATCTGA TCCACGCGTT GTTCTGCGAG ACCAATCCGA TTCCGGTTAA GGGCGCCATG GAGATGATGG GCCTGATCAA GGGTGTGTAC CGCCAGCCGC TGTGGCCGAT GGCCGAAGCC AGCGCCGTCC GCGTGCAGCA GGCCATGAAG GAGGTCGGTC TTCTTGATTA A
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Protein sequence | MDIKNLQGSI VALVTPFNED GSVDFDALAG LIDFHLEKGT DSILVLGTTG ESSTMSHEED DAVCDFTVKR VAGRVPVIAG SGSNDTETMR MKSLSYQKLG ADGLLVITPY YNKSNEEGIY QHFKTVLDAV EIPCILYNVP SRTGCSISEN NVKRLAQHPN ALGIKEASGS IAYATNIARY LSDDFFMFSG NDDMVIPLMS LGARGVISVW ANVDPAAVHN MTTAYLEGRH DEALKIQLDN LDLIHALFCE TNPIPVKGAM EMMGLIKGVY RQPLWPMAEA SAVRVQQAMK EVGLLD
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