Gene Shel_19420 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_19420 
Symbol 
ID8395831 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp2176173 
End bp2176643 
Gene Length471 bp 
Protein Length156 aa 
Translation table11 
GC content58% 
IMG OID644986693 
Producthypothetical protein 
Protein accessionYP_003144307 
Protein GI257064635 
COG category[S] Function unknown 
COG ID[COG1576] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00246] rRNA large subunit m3Psi methyltransferase RlmH 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000114035 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAAATTG AGATCATCGC CGTCGGCAAG CTGAAGGAGA AGTACTGGCG CGACGCTTGC 
GACGAGTATC TGAAGCGATT GAAGGGCTAT GCGAAGGTGA CCGTCCATGA GGTGCCTGAC
CTCGACCCGA AAAAATGCGG CGGCGACGAG AACGCCCTGA AGCAGGAGGG CAAATCCATT
CTGGAGGCAC TGCCCGAACG CTCTCATGTC ATCTTGCTGG ACATCGACGG CAAGGAATTC
TCGAGCGATG GCATAGCTGC GCGCATCGAC GCCATCAAGT TGGGTGGCGT GAGCGACATC
ACGTTCGTGG TCGGCGGATC GAACGGCGTA AGCGACAGCG TGAAATCCGC AGCCAACGAG
CGCCTGTCCT TCGGAAGGAT CACGCTCCCT CATAATCTGG CCAGGGTCGT GCTGCTTGAG
CAGATATACC GCGCCTTCAA AATCAGCCGC GGCGAGCCTT ACCACAAATA G
 
Protein sequence
MKIEIIAVGK LKEKYWRDAC DEYLKRLKGY AKVTVHEVPD LDPKKCGGDE NALKQEGKSI 
LEALPERSHV ILLDIDGKEF SSDGIAARID AIKLGGVSDI TFVVGGSNGV SDSVKSAANE
RLSFGRITLP HNLARVVLLE QIYRAFKISR GEPYHK