Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_12840 |
Symbol | |
ID | 8395175 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | + |
Start bp | 1471804 |
End bp | 1473963 |
Gene Length | 2160 bp |
Protein Length | 719 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 644986040 |
Product | ABC-type multidrug transport system, ATPase and permease component |
Protein accession | YP_003143660 |
Protein GI | 257063988 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAAGATTC TGAAATTTCT CAAGGGATGG GGGAGATACG TCCTGGTGAT TGCGGTATTG CTTCTGGTAC AAGCCACCGC CGACCTCGCC CTTCCCAAAT ACACCGCCGA CTTGGTTGAC GTCGGCATCC AGCAGTCGGG CATTGAAAGC TCCGCCCCCG ATGAGATGCG AAACGTCACG TACGACGCCG TCATGAAGCT GGCGGGCGAC GATGCCGAAA CCATCGAGGC AAGCTACAAC GCGACCGATG ATTTGACCTA TGTCATAAAC GATTACGGCA AGGCGCACCG CGCCGAGTTG GAAGCTGTCG TCGCCAGGCC GCTTATGCTC GCGTCCATCG CAGGTCAAGC GGGCATCGAC CCCACAGCCT TCGAAGACGA GCAGGCAATC CGGCAGATGC TGGAAAACGC ACCCGTCGAC AACAAGGCGC AGACCGAAGC CATCACGGCG CTGGTCGATG GTTCTATGGA CCCGGCGCTG GTCCAGCAAT ACGCCGCATA CGCCGTAAAG GCCGAGTACG ACGCCATCGG AAAAGACACG ACTGCCATCC AGATGGGATA CCTGTTCAGG ATCGGCGGCA TCATGCTTGC CATCGCGGCC ATTATGATGG CGGCCTCGGT GGCGGTGGGC TACGTCGCAT CGCGAACCGC GGCTGGAGTC GGCCGCGACC TGCGCCGACG CCTGTTCACC AACGTGGTGT CCTTTTCCGA TAAGGAAGTG CAATCGTTCT CGGTGGCATC GCTCATCACC CGCGGCACCA ATGACATCCA GCAGATTCAA AACGTCATTG CCATGGGCCT TCGCATGGTT CTGTATGCAC CCATCCTGGC CATCGGCGGC ATCGTCATGA TCACCCGCAC GAACACCTCC ATGAGCTGGA TCATCGTGCT GGGTCTGGCG CTGGTGGCGG TCGTCGTCGG AACCCTGTTC GCCATCGTCA TGCCGAAGTT CCGCATCGTG CAGAAGCAGG TCGACCGAGT GAACCAGGTG GCCCGCGAAA TGCTGAACGG CATCTCGGTG GTGCGGGCCT TCAACCGCCA GGCGTTCGAG CGCCAAACCT TTGAAACCGC CAACTCAAAC CTCAAGGCCA CGCAGCTGTT CACCAACAGG GCCATGGTTC TCATGATGCC GTTCATCTCG CTCATCATGA ACGGTATGTC TGTCCTCATC GTGTGGATGG GCGCCTCGAA AATCGACACG GGCGTCATCC AGACGGGCGA CCTGATCGCG TTCATCACCT ACGCCATGGT CATCATGATG TCCTTCATGA TCATCGGCAT GATGTCCATC ATCATCCCGC GCGCCGAAAT CAGTGCCCAG CGTATCGACG AGGTGCTGAC CTGCGAAACC TCCATCCGCG ATCCCGAGGA GTTCCACCTG CACCCTGCGG CTGCGCAACC GGGCGGCGTG CGCGTGACCT TCGAGGACGT GAGCTTCGCG TTCGCCGAGG ATTCGGAACC TGCATTGAGC CACATCAGCT TCGAGGCGGC GCCCGGCACC ACCACGGCCG TCATCGGGTC CACGGGCTCC GGCAAATCCA CGCTGCTCAA GCTCATCGAG CGTTTCTACG ACGTGACCGA CGGACGTATC CTGGTCGACG GGGTCGATGT GCGCGAAATC CCGCTTCGCG ACCTGCGCAG CCAGTTCGGC TATGTGCCGC AGCAGTCGTT TTTGTTCAGC GGCTCGGTAG CCGAAAACGT GGCATACGGC GAAGGTGCCG TTGATATGGA CGTGGTTCGC GCCGCGACCG ATGTGGCCCA GGCGACGGAG TTCGTGGAGA AGCTTCCGGA GGGCTTTAAC ACCGAAGTGT CTCAGGGAGG CACAAACGTC TCCGGTGGCC AGCGCCAACG CCTGTCCATC GCCCGAGCGC TTGCAAGCAA GCCACGCGGC TACCTGTTCG ACGACAGCTT CTCGGCGCTG GACTTCAAGA CCGACGCCGC GCTGCGCCGT GCGCTCGACT CCCAGATGGG GGAGGCCACG GTCATCGTCG TGGCGCAGCG CATCGCCACG GTCATGAACG CCGACAACAT CCTGGTGCTG GACAACGGCG AAATCGTCGG TTCCGGCACA CACGCCGAGC TGTTGGAAAG ATGCCCGACC TACCTGGAAA TAGCGCAGTC GCAGCTCTCG GAATCTGAAC TGAAGGGAGG TGGTCGCTAA
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Protein sequence | MKILKFLKGW GRYVLVIAVL LLVQATADLA LPKYTADLVD VGIQQSGIES SAPDEMRNVT YDAVMKLAGD DAETIEASYN ATDDLTYVIN DYGKAHRAEL EAVVARPLML ASIAGQAGID PTAFEDEQAI RQMLENAPVD NKAQTEAITA LVDGSMDPAL VQQYAAYAVK AEYDAIGKDT TAIQMGYLFR IGGIMLAIAA IMMAASVAVG YVASRTAAGV GRDLRRRLFT NVVSFSDKEV QSFSVASLIT RGTNDIQQIQ NVIAMGLRMV LYAPILAIGG IVMITRTNTS MSWIIVLGLA LVAVVVGTLF AIVMPKFRIV QKQVDRVNQV AREMLNGISV VRAFNRQAFE RQTFETANSN LKATQLFTNR AMVLMMPFIS LIMNGMSVLI VWMGASKIDT GVIQTGDLIA FITYAMVIMM SFMIIGMMSI IIPRAEISAQ RIDEVLTCET SIRDPEEFHL HPAAAQPGGV RVTFEDVSFA FAEDSEPALS HISFEAAPGT TTAVIGSTGS GKSTLLKLIE RFYDVTDGRI LVDGVDVREI PLRDLRSQFG YVPQQSFLFS GSVAENVAYG EGAVDMDVVR AATDVAQATE FVEKLPEGFN TEVSQGGTNV SGGQRQRLSI ARALASKPRG YLFDDSFSAL DFKTDAALRR ALDSQMGEAT VIVVAQRIAT VMNADNILVL DNGEIVGSGT HAELLERCPT YLEIAQSQLS ESELKGGGR
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