| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_10990 |
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| Symbol | |
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| ID | 8394990 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | + |
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| Start bp | 1253864 |
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| End bp | 1254421 |
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| Gene Length | 558 bp |
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| Protein Length | 185 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 644985857 |
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| Product | 16S rRNA processing protein RimM |
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| Protein accession | YP_003143483 |
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| Protein GI | 257063811 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
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| TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000722638 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.00000000154535 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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| |
Sequence |
| Gene sequence | GTGCAGACGT GGGCCAACGT TGCCGTTTTG GCATCTGTTC AAGGCTTGAA GGGAAGGTTC
GTAGCGCATC CTGCGCACGG CCTTCCTTTT CTTTTGGAAC CGGGCATGCG CGTAAGCTTC
GTGCCGCCCA ACTTGGACGG GCCGCGCCAC GTGAAAGTGC GCGATGTGCA GCATATCAGC
GGGGATGACT GGCTGGTCAG CTTCAAAGGC GTGAAGGACC GCACCCAGGC CGAGGCTCTG
GTGGGGAAGT TCTGCCTGGT GGATACCGAC GAGCTGCCCG AAGACTACGA AGACACCCTC
TACATAGATG ATGTTGCGGG CTACGCCGTG GTCGACGAGA ACCTGGGCAG CATCGGCACG
CTGACCGAGG TGCTCGACAT GCCGGGCCAG TCGCTTTTGT CCGTCGACCG CGACGGGCGC
GAGGTGCTGA TTCCCGCCGT CGACGAGTTC ATCCTGGATA TCGACGACGA GGCGGAAACC
ATCCTGGTCA GCATCCCTTC AGGACTGCTG AACCTGGATT CGCTCGAAGC CGTGGACGAA
CAAGGGGAGG ATAACTAG
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| Protein sequence | MQTWANVAVL ASVQGLKGRF VAHPAHGLPF LLEPGMRVSF VPPNLDGPRH VKVRDVQHIS
GDDWLVSFKG VKDRTQAEAL VGKFCLVDTD ELPEDYEDTL YIDDVAGYAV VDENLGSIGT
LTEVLDMPGQ SLLSVDRDGR EVLIPAVDEF ILDIDDEAET ILVSIPSGLL NLDSLEAVDE
QGEDN
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