Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_09390 |
Symbol | |
ID | 8394830 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | + |
Start bp | 1084341 |
End bp | 1085345 |
Gene Length | 1005 bp |
Protein Length | 334 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644985698 |
Product | tRNA pseudouridine 55 synthase |
Protein accession | YP_003143329 |
Protein GI | 257063657 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0130] Pseudouridine synthase |
TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.86572 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACGTG GGGAAAGCGG CCTGTCGCTT GTAGTGGGCG TGGACAAGCC TAAAGGCATG AGTTCCCATG ACGTGGTCAA CCGGTGCCGC CGCATCTTCG GCGAGCGCCG CGTGGGCCAT ACCGGAACGC TCGACCCTTT GGCAACGGGC GCCTTGGCGG TGTGCATCGG GCCTGCTACC AGGCTTGACG CGTACTTCGT CAACCACGAC AAGGTCTATG ACGTGCGAAT AGCCTTCGGT ACGGCAACCG ACACCGACGA CAGGTGCGGC CAGGTCATCC GTACGGCCGA GGTGCCGCCC GAGCTGTCTG ACGAGACCCA GGCCAGAGCC TTTCTCTTCA CATGTCTGGG CAAGCAGCTG CAGACGCCGC CGCAGTATTC GGCCATCAAA CGCGACGGCA AGCGCGCCTA CGAGGCCGCC CGTGCCGGCA ACGTCGTCGA GCTGGATGCC CGCGAGATTA CCGTGTACGC CGCCGACCTG CTGCAAACGG GCCGCACCGA GGACGGCGTC CTGTTCTGGG ACGTTCGGTT CGGCGTTTCC AAGGGGACGT ACATCCGCTC GCTGGCCCGG GACATCGGAG TTCGTCTGGG GACGGCCGCC CACGTGTCGG AGCTTCGCCG CATCGAGGCG GGCGGGCTGC ATGTGGACCA GTGCGTGACT CTGGAGGAGC TGGAGGCCGC AGGCCCGAAG GCGGCCATCG ATCCCGTGCG GCTGCTGGGC TTCCGCACGG CGTTTCTCAA CGAGCGGCAG CAGGCCGACG TGGCCAACGG AAAGCGTCTG CCTGCGAAGA CCCTGCAGCT GTTCGAGGCG CCCCGGAACG ACCAGGGCGA TTGCTGCATG ACGGCACACG CCAAACGGTC GAGTGCGCCT TTGGCGGACG GCGAGACCAT AAGCATGGTC GCAGGCAATA CATTGGTTGC CCTCTATTCC GCACAGGTGA ATCGTGGTAT GGTTTCACCC TGCTGCGTCT TTGCTCAAGG AGTGTATCGT GGGTCTAATA TATAG
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Protein sequence | MKRGESGLSL VVGVDKPKGM SSHDVVNRCR RIFGERRVGH TGTLDPLATG ALAVCIGPAT RLDAYFVNHD KVYDVRIAFG TATDTDDRCG QVIRTAEVPP ELSDETQARA FLFTCLGKQL QTPPQYSAIK RDGKRAYEAA RAGNVVELDA REITVYAADL LQTGRTEDGV LFWDVRFGVS KGTYIRSLAR DIGVRLGTAA HVSELRRIEA GGLHVDQCVT LEELEAAGPK AAIDPVRLLG FRTAFLNERQ QADVANGKRL PAKTLQLFEA PRNDQGDCCM TAHAKRSSAP LADGETISMV AGNTLVALYS AQVNRGMVSP CCVFAQGVYR GSNI
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