| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_08650 |
|---|
| Symbol | |
|---|
| ID | 8394756 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Slackia heliotrinireducens DSM 20476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013165 |
|---|
| Strand | + |
|---|
| Start bp | 1006824 |
|---|
| End bp | 1008026 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 644985625 |
|---|
| Product | translation elongation factor 1A (EF-1A/EF-Tu) |
|---|
| Protein accession | YP_003143262 |
|---|
| Protein GI | 257063590 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0050] GTPases - translation elongation factors |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00485] translation elongation factor TU |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000915749 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.000000299529 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAAG AGAAGTTTGA GCGTTCTAAG CCGCATGTTA ACATCGGCAC CATCGGTCAC
GTTGACCATG GCAAAACGAC GCTGACTGCC GCCATTTCCA AGACCCTGTC CATGAACGAC
GGATCTCATG GTACTGCTCA TGCAGACTTC ACTGCCTTCG AAGACATCGA CAAGGCTCCT
GAAGAGCGCG AGCGCGGCAT CACCATCTCC ATTGCTCACA TCGAGTACGA AACCGACAAG
CGTCACTACG CTCACGTTGA CTGCCCCGGC CATGCTGACT ACGTCAAGAA CATGATCACC
GGTGCTGCTC AGATGGACGG CGCTATCCTG GTTATCGCCG CAACCGACGG CCCCATGGCC
CAGACCCGCG AGCACATCCT GCTCGCCCGT CAGGTCGGCG TTCCCTACAT CATCGTCTTC
CTGAACAAGT GCGACATGGT TGACGACGAC GAGCTCATCG AGCTCGTCGA GATGGAAACT
CGTGAGCTCC TCACCGAGTA CGAGTTCCCC GGAGACGACC TGCCCATCAT CAAGGGCTCC
GCTCTGAAGG CTCTCGAAGA GGATCCCGAG TGGGTTGCCC CCATCTGGGA GCTCATGGAC
GCCGTTGACG AGTACATCCC CACTCCCGAG CGCGACGTCG ACAAGCCGTT CCTGATGGCT
GTCGAGGACA CCATGACCAT CACCGGCCGT GGTACCGTTG CAACCGGCCG TGTCGAGCGT
GGTGTTCTGC ACCTCAACGA CCCGCTGGAG ATCGTCGGCA TCAAGGAAAC TCAGACCACC
GTCTGCACCG GCATCGAGAT GTTCCGCAAG CTGCTTGACG AAGCTCAGGC TGGCGACAAC
ATCGGCTGCC TGCTCCGTGG CATCAAGCGC GAGAACATCG AGCGCGGCCA GGTTCTGTGC
AAGCCCGGTA CCGTGACCCC GCACACCGAG TTCGAAGGCC AGGTCTACAT CCTGACCAAG
GAAGAAGGCG GCCGTCACAC CCCGTTCTTC AACAACTATC GTCCGCAGTT CTACTTCCGC
ACCACGGACA TCACCGGCTC CGTCAAGCTG CCCGATGGCG TCGAGATGGT TATGCCTGGC
GACAATGTCA CCATCGTTGG CGAGCTGATT CACCCCATCG CTATGGAAGA GGGCCTGAAG
TTCGCTATCC GCGAGGGTGG CCGCACGGTC GGTTCCGGCC GCGTCACCAA GATCATCAAG
TAA
|
|---|
| Protein sequence | MAKEKFERSK PHVNIGTIGH VDHGKTTLTA AISKTLSMND GSHGTAHADF TAFEDIDKAP
EERERGITIS IAHIEYETDK RHYAHVDCPG HADYVKNMIT GAAQMDGAIL VIAATDGPMA
QTREHILLAR QVGVPYIIVF LNKCDMVDDD ELIELVEMET RELLTEYEFP GDDLPIIKGS
ALKALEEDPE WVAPIWELMD AVDEYIPTPE RDVDKPFLMA VEDTMTITGR GTVATGRVER
GVLHLNDPLE IVGIKETQTT VCTGIEMFRK LLDEAQAGDN IGCLLRGIKR ENIERGQVLC
KPGTVTPHTE FEGQVYILTK EEGGRHTPFF NNYRPQFYFR TTDITGSVKL PDGVEMVMPG
DNVTIVGELI HPIAMEEGLK FAIREGGRTV GSGRVTKIIK
|
|---|
| |