Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_07540 |
Symbol | |
ID | 8394645 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | - |
Start bp | 875888 |
End bp | 877687 |
Gene Length | 1800 bp |
Protein Length | 599 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 644985514 |
Product | carbon starvation protein, predicted membrane protein |
Protein accession | YP_003143160 |
Protein GI | 257063488 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG1966] Carbon starvation protein, predicted membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.620318 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.553558 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATGCAA TACTCGTCCT GCTTGTCAGC ATCGCCGTTT TGATCTGCGG ATACGTCTTT TACGGCAGCT GGCTGGCAAA ACAATGGGGC ATCGAGCCCG ATAGGGTGAC CCCCGCCCAT GAGCTGGAGG ACGGCGTGGA CTTCGTTCCC GCCAAACCCT ATGTCGTGCT GGGCCACCAC TTCTCGTCCA TCGCCGGAGC GGGTCCCATC AACGGTCCCA TCCAGGCCGC GGTGTTCGGC TGGGTTCCCG TGCTCCTGTG GGTCCTGATC GGAGGCATCT TTTTCGGAGC GCAGCATGAC TTCGGCTCGC TTTTGGCATC CATCCGCAAC AAAGGCGCGA CGCTGGCCAC CGTCGTCCGT GACAACATCG GAGAAGACGC CAAGAAACTC TTCTGCGTGT TCGCGTACCT TACCCTTGTT CTGGTGGTGG CCGCCTTCGC ATCCATCGTA GCCAACACCT TCCAGGTCAT GCCTACGCAG ACCGACGTCA TCAACATTCA GAACTCCCAG GTCGCCATGA TCTCCACTCT GTTTATCGTG GCAGCCGTCA TCTGGGGTTT TGCAACTCGC GGCCGCAGCA TCCCCACCGC GGCGAACGTT GCGGCAGCCA TCGTGGTCAT CGTCGCCATC GTGGCTGTGG GATACAACCT GCCCAATGTC ATCACGCTCG GCCACGATGC CTGGATGTAC ATTCTGGGCG TCTACATCCT GATCGCCTCC GTCACCCCCG TGTGGATCCT CCTGCAGCCG CGCGACTATC TGTCGAGCTA CCTGTTGTAC GGCATGCTGG TACTTGCCAT CGTCGCAGTT GTCGGCGCGG GCGTCATGGG AGTTGCCGGC GACCTGCAGA TTCCCGCCTT CGCAGGTTTC TCGGTCACCA ACACCGCATA CGATGTAACT ACGGGGGCTG CCATCGTCGA TCCCGAAACC GGCCTTGCCG TGATCAACAA GGCGGCCCAG GGAGGCTTCC TGTTCCCGGC TTTGTTCGTG ACCATCGCCT GCGGCGCCAT TTCCGGCTTC CATAGTCTGG TCGCCTCCGG TACCACTTCC AAACAGATCG AGAAGGAATC CCAGGCACAG CCCATCGCCT ACGGCGGCAT GCTCATCGAG TGCCTTTTGG CCGTGCTGTC TTTGTGCGCC GTCGGCTTCG TGTGGGCCCA ATACAGCGCC GGCGGCTACG CCTCGCCTAC CCAGGTGTTC GCAGACGGTC TTTCCCAGAT GCTCGCCGTC ATTCCTTTCA TCGGCGGCAC GCAGCAACTC GCCTACGCCC TGCTGATTCT GGCAGTGTCG GCCTTCTGCC TGACATCCCT GGACACCGCA ACCCGTCTTG CGCGCTACAT GTTCCAGGAG CTGTGGATTC CCGCAGGCAA GACCGCAGAA GAACTCACCG GCTTTCGCAA GGTCCTGTCC AACAAGTATG TCGCCACGGT CATCACCGTC GTCCTGGGCA TTGGGTTGGG CATGACCGGC TACACCATCA TCTGGCCGCT TTTCGGCGCG GCGAATCAGC TGCTTGCCGC ATTGGCGCTG CTCACGGTTT GCACGTGGCT CGGCAACATG GGCAGGAACA ACAAGATGTT CTATCTGCCG ATGGCTTTCA TGCTGCTCGT CACGCTGACG TCTCTGGCCC TTACCATGCA GACCAAGGTG GTTGCCATCA TGGCCGGAGG CGACATCTTC GCCCCTATCG TTCAGCTGGC GCTTGCCATC GCCCTGTTCG TCCTGGCCAT CATCCTGGCC GTCAAGGGCG TCAAGACCAT CGCATCCCAG AAGTCGAAGT CCGAGGCCGA GGCCGCATAG
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Protein sequence | MNAILVLLVS IAVLICGYVF YGSWLAKQWG IEPDRVTPAH ELEDGVDFVP AKPYVVLGHH FSSIAGAGPI NGPIQAAVFG WVPVLLWVLI GGIFFGAQHD FGSLLASIRN KGATLATVVR DNIGEDAKKL FCVFAYLTLV LVVAAFASIV ANTFQVMPTQ TDVINIQNSQ VAMISTLFIV AAVIWGFATR GRSIPTAANV AAAIVVIVAI VAVGYNLPNV ITLGHDAWMY ILGVYILIAS VTPVWILLQP RDYLSSYLLY GMLVLAIVAV VGAGVMGVAG DLQIPAFAGF SVTNTAYDVT TGAAIVDPET GLAVINKAAQ GGFLFPALFV TIACGAISGF HSLVASGTTS KQIEKESQAQ PIAYGGMLIE CLLAVLSLCA VGFVWAQYSA GGYASPTQVF ADGLSQMLAV IPFIGGTQQL AYALLILAVS AFCLTSLDTA TRLARYMFQE LWIPAGKTAE ELTGFRKVLS NKYVATVITV VLGIGLGMTG YTIIWPLFGA ANQLLAALAL LTVCTWLGNM GRNNKMFYLP MAFMLLVTLT SLALTMQTKV VAIMAGGDIF APIVQLALAI ALFVLAIILA VKGVKTIASQ KSKSEAEAA
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