Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_04420 |
Symbol | |
ID | 8394334 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | - |
Start bp | 526702 |
End bp | 527265 |
Gene Length | 564 bp |
Protein Length | 187 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 644985206 |
Product | transcriptional regulator, tetR family |
Protein accession | YP_003142852 |
Protein GI | 257063180 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.00197564 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTTCAAGG ACCGGACGAA GAAACTGTTC GCGGCAGAAC TGGAGAACAT GCTTACCGAG ATGCCCCTCG AGAAGGTGCG CGTGAAGGAC CTCTGCGAAC GTTGCGGAGC GCAACGCCAG GCCTTCTATT ACCACTTCAA GGACAAATAC GACCTGGTCG CATGGATATT CGAGCAGGAC TTCCGCGCCG GTATGGAAGA GACCGCCCTG ACCGACTACC GCGAGCAAAC CGCAGCCGCC CTGGCGCACA TGTGGACCCG CCGGTCGTTC TACCGCAAAG CCTTCGCGGA CAAGTCCCAG AACTCCATCG AATCCTACAT TCAAGCGTTC GACGTCGAGA TGAGCAGTCG CGTGGTGCTG AGGCACTCCG GTGCAAAAAC CCTTTCTGAA CAGCGTCTTT TCGATATCAA ATTCCAGTCA TACGGCAGCA TCGGCATTAC CGTCGAATGG CTCCGCGGCG AGCTGGAATC CACGCCTGAG AAAATCGCCA ACTGGGAATA CGAGCGCATG CCGAAGTTCA TGCGCGACGC CTACGACGCT GCAGTCCGCG AAGGCATCCA GTAG
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Protein sequence | MFKDRTKKLF AAELENMLTE MPLEKVRVKD LCERCGAQRQ AFYYHFKDKY DLVAWIFEQD FRAGMEETAL TDYREQTAAA LAHMWTRRSF YRKAFADKSQ NSIESYIQAF DVEMSSRVVL RHSGAKTLSE QRLFDIKFQS YGSIGITVEW LRGELESTPE KIANWEYERM PKFMRDAYDA AVREGIQ
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