Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_01950 |
Symbol | |
ID | 8394087 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | + |
Start bp | 241152 |
End bp | 242702 |
Gene Length | 1551 bp |
Protein Length | 516 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 644984967 |
Product | cell envelope-related function transcriptional attenuator common domain protein |
Protein accession | YP_003142614 |
Protein GI | 257062942 |
COG category | [K] Transcription |
COG ID | [COG1316] Transcriptional regulator |
TIGRFAM ID | [TIGR00350] cell envelope-related function transcriptional attenuator common domain |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000132864 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCCAGG CTGCCCAGCC CACCATGGTG TTCGACCAGC CGGCGGTTGC GGGTTCGGTC AGCCCTGTGG CCTACAGCAA GACGGGCAGC AAGCGCAAGG AGCGCAACGC TTCCAAAAAG GCCGCGCAAG TCGCTCAGAG CAGCAACCCG TACGTCGCCA GCGCGTACAA GACCAAGAAG AAGGCCCCCT TGGCGCTGAA GATTCTCGGC GCTGCGGTGC TGGTGTTGGC CCTCATCGGC GGCGGCCTGG CGGCATTCGC CTACATGTAC GCCAGCAACA TCGACAAGAA CCTGAGCGAA GGCATCGACC AGTCCACCCT GGACATCTTG GGCGAGAACC AGATCGCGCC CGGCGATCCG TTCTACATGC TCATCGTGGG TACGGACGGG TCTGAGGCCC GCAAGGAGAC CTACGGCGAT ACCTTCCGCT CCGACTCCAT GATTCTCGCG CGCATCGATC CTGTCCAGAA GAAGGTCACC CTCATTTCGC TCGAGCGTGA CACATACGTG AACATCGAGG GGTACGGCCC CAACAAGCTC AACGCGTCCG CCGCGTACGG AGGCGCGCCG CTGGTCATCT CCACGGTTCA GGAACTGGCC GGCGTGCCCA TCAGCCACTA CGCGCAGGTC GACTTCGACG GTTTTGAATC GGCCATCGAT GCCCTGGGCG GTGTGGAAGT GGACGTGCCC ATCGACATCG ACGACGACCG TGCCGGCGGC CAACTGAGTG CAGGCCTTCA AACGCTTAAC GGCGAGCAGG CCCTGATCCT GTGCCGCTCG CGCCACGCGT ACGACGCGTA CGGTTCGGGC GACTACTACC GCATGGCCAA CCAGCGCCTG GTGCTCGGCG CCATGGTTAA GAAAGTTCTG GCATCCGACG CCGTCACGCA GGCGGAAGTG GTCAACGCCA TGTCTAAGTA CATCACCACT GACCTTTCGG TCCAGGACGT TTTGGACCTT GCGGCCATGT TTAAGGGCAT GGACACGTCC ACTGACATCT ATTCGGCCAT GACACCCACC ACCAGCGCGT ACATCAACGG CACGTGGTAC GAGTATCTTA ACGTTGAGGA ATGGCAGAAG ATGATGGCCC GCGTGGATGC CGGCCTGCCG CCCTACGAGG ACGACGCCCA GAATCTCAAC GAGGGCGGTG TTATCGACCA GAACAAGGCC TACCTGGGCA AAGACCCGAA CATGGCTGTG GATACCTCCG GGGCGCAGAC CACCACCACG ACGCCGACTC CGGAAACCGA GCAGACCTAC GACAGCAGCT ACTACAGCGG AACCGACAGC GGCTACTACT ACGAGGATCC CAACACCTAC TACGAGGACC CCAACACCTA TTATGAGGAT CCGAACGCCT ATTACGAAGA CCCCAGCTAC TACGAGACGC CCGAAGAGCC CCCGGCTGAG GTTGATACCG GCGGCGGCGA GTACGTTGAT CCGGGCCCGG TCGATTCGGG CGGCACGGGC GGTACCGGCG GCGGGGATGT GCCCGTGGAA GACGGCGGCG ACACCGGTGG TGGAGAAGCA CTGACCGAAG GCGGCCAATA G
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Protein sequence | MPQAAQPTMV FDQPAVAGSV SPVAYSKTGS KRKERNASKK AAQVAQSSNP YVASAYKTKK KAPLALKILG AAVLVLALIG GGLAAFAYMY ASNIDKNLSE GIDQSTLDIL GENQIAPGDP FYMLIVGTDG SEARKETYGD TFRSDSMILA RIDPVQKKVT LISLERDTYV NIEGYGPNKL NASAAYGGAP LVISTVQELA GVPISHYAQV DFDGFESAID ALGGVEVDVP IDIDDDRAGG QLSAGLQTLN GEQALILCRS RHAYDAYGSG DYYRMANQRL VLGAMVKKVL ASDAVTQAEV VNAMSKYITT DLSVQDVLDL AAMFKGMDTS TDIYSAMTPT TSAYINGTWY EYLNVEEWQK MMARVDAGLP PYEDDAQNLN EGGVIDQNKA YLGKDPNMAV DTSGAQTTTT TPTPETEQTY DSSYYSGTDS GYYYEDPNTY YEDPNTYYED PNAYYEDPSY YETPEEPPAE VDTGGGEYVD PGPVDSGGTG GTGGGDVPVE DGGDTGGGEA LTEGGQ
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