| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_4088 |
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| Symbol | |
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| ID | 4457577 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | - |
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| Start bp | 4973607 |
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| End bp | 4976780 |
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| Gene Length | 3174 bp |
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| Protein Length | 1057 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 639704858 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_848188 |
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| Protein GI | 116751501 |
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| COG category | [S] Function unknown |
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| COG ID | [COG5617] Predicted integral membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.475202 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.216306 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCTCAC AGCTCCTCGC GAAGATACGA CAACGCAAAG GCCTGGTCCT GCTGCTCGCC
GTCGAGGGGT TTTTGCTCCT GTTGTTTCCG CCGTCGTTGA TCCTGAGCGC CTCGCATATC
GCCGGCGGAG ACACGCCATC GCACCTGCCG GCGGCCGTTG CGCTGAGCGA GAGTCTCGCC
ACGGGCGGCC CCCTTGTTAC GTGGATGCAC GGCAATTATG CCGGATATCC CCTGTTCCTG
AATTACTTCC CCTTCCCCTT CTTCATCATG AGTCTGCTTG CCGCGGCGGT GCCGCTGCAG
GTTGCTTTCA AGCTCGTCAC CCTACTGCCG GTATTCGGGC TTCCCGCCGC GATTTATTTC
TGCCTGCGCA GATTCGGGTA CGCGGACCTC GTGGCCGCCC TGGGAAGCGC ACTGGCGCTG
CCCTTTCTGG TCATGAAGGA AAACGCCATG TGGGGCGGAA ATATCGCGAG CACCCTGGCG
GGTGAATTCT GCTACGGGAT TGGACTGGTC ATCGCCGTGG TCCTGACCGG GAAAGTATTC
CATGATATCC GGGATGGACG CTCCCTGTTT CGCAACAGCC TGCTCGAAGG CCTGGCGGCT
TTGAGCAACG GATATCCCCT GCTTCAGTTC GGTTTCGCCA GTTCCTACTT CCTGTTGCGC
GGGCGGTTCA TTCCATACCT CGTCGCCCTG CATGCCATTG CCTTCGGAAT CATCTCCTTC
TGGATCGTAC CCCTGATCGC GCGTCTCCCC TGGGACACCT CGTTCAACCA CGCCTGGAAG
TTCGAAAGCT GGACCGAGCC GCTGCCCGTC GCGCTGTTTC CCGCCCTGCC GGGCATTCTT
TTCGGCTGGG CCGCCGGCCG TGCGTGGTTC GGAGGAAATG GTCCGGCCGG ACAGCGTAAG
ATGCCCAGCG GGGGGCCCGA GCAGTACCTT TGGTGGAACG TCGGCATCGC ACTGGCCTGT
TTCGGCCTGG GGCCCGCCTT CGGATTGGTC GACATCCGCT TCTTGCCCTT CGCGCATGTT
TTTCTCATTC TGCTCGGGGC GATCGGATGG GGAAAGGTTC TGGAGCGGTT CCGACACCAG
GGGCTTTGGA CGGCCGTCGC GGTGCTTCTG ATGCTGGGTT GGGCCGCTGC CGGATCGTCC
ACGGTGAGGA CCTGGATTCA ATGGAACTAC TCGGGATTTG AAGCCAAGCC GTTGCGGCAA
CCGTTCGAGC AGGTCAATAT CCACCTGCAG GGAACCGAGA ACAGCCCTCG CGTGGTGTAC
GAACACGCGG AAGAGAACAA CGGCGCGGGC ACGGTGCGAG CGTTCGAACT GTTGCCCTGT
TTCTCGGGAA GATCGACGCT CGAAGGGCTC TACATGCAGT CGAGCATCAC TTCTCCTTTT
GTTTTCTACC TCCAGTCCGA GCTCACCCGA ACCCCTTCGT GCCCCTTTCC CGGCTATTAC
TATTCGCGCT TCGACGCGGA TCGGGCGGCA AAGCACCTCA GCTTGTTCAA CGTCCGCCAT
GTGATTTCGG TGAGCGGCGA AACCGGGGCG GCCCTCGACC GCAGTCCGCA TTATCACCCC
GAAATCGCTT TCCCTCCCTA TCGAATCCAC ACGGTCGTGG ACTCCGGGAA TTCCTACGTC
GAGCCTCTGC GCTTCCGGCC CCACAGGATC CCGTGGGAGG GCTGGAAACA AACCCAGTTC
GAGTGGTTCC GGAAATCGTC CCTGGACGTG GTTCTCGTCG TCGCGTCCGA GGATTCTCCG
GGCAACTACT GGCGACAGCT CCCGCCTTAT GACGGCACCC CGGAGAACCT GCCAAGGGTG
GAGCTGACGG ATGCGTCCGC ACCCTTGGTG AAGGCCTCGG CAACCCTGGA AAAGAACCGT
ATCGTGGTCG AAACATCCAT GCCGCGCCAT CCGCTGTGGC TGAAAATCTC CTTTCATCCG
GACTGGCGCA TCGTGGAGGG AGCGGGAGAG CTCTACCTCG TCTCCCCCTC CTTCATGATG
CTGGTGCCGG ACACTCCGAG GGTGGTCCTG CGCTTCGACA CGAGCGGCGG GGTCTATGCC
GCGGGGCGAT ACGCGACACT GCTCACGGGC CTGTTGACGG TGATTGTCTT CTGCCTCAGG
TTCAGGCAAC GACGACGCGC TCGCGCCGGT CCCGCGACCG GTCCGGGGGC CGATCGCCCC
CAGCCGGAAA TCCCGTCTTT GCAGGGCGAG GCGGAAAGCC CGGCTTCCGG CACCGGGCAA
ACCGGCGACC GTGCAGTCTA TCCCGCGGTT CCCGCTTTGG TCTGGCTGGT CCTGGCCGCC
GCCGTGGCCC TGTATGCCTG GCACAGGGAT GAGCGGGACC CGCTGCTCCT CTACCACAAG
GCCCTCCGGG CATATGAACG GGCTGAAGCG GGCAACCCCA CACACGGTGA CGACACCCTT
CCCGGCAGGA CGCCCGCAAC CCGTCCGGGA ACGACCATGG CCCAGGCTCG AGAATGGTTT
CTGCGCTGTC TCAACCGATA TCCCCTCTCT CCCGTCGTCG ACCATGCCGC TCATTACGTC
GCCGCCTCGT ACATGACGGA AAACAAGTGG CAGGATTTGA TCGATTTCTA TGAATCTTTT
CTCGCCGCCT ACCCGGAAAG CCGAATCTAT CCGGAAGCGC TCTATGAAAT GGGAGCGGCC
GCGTCCCTCC TGGGCCGGAC GGACGTCGCA TCCCGCCGCT ACTGGCAGGC AGTGACGTTC
TTCCCGGAAT CGGAACGTGC CGGGGCGGCC GCCGCTCGCC TGGTGGAAAT CAGCTCACCG
GGGGAAATCC TCGGAGTGGC CCGCGAGTAC TATGCCCGCA AGGACTTCTT CAGTGCATAC
CCGCTGCTGA GCGCCCTCTC CGTCGGCCCC CCGTCACCGG TGCAGACGGA GGCTGCCCTG
CTGTGCGCCT ATGTGCTGTT TCATCAGAAT CGTTGGCCCG ATTCGGCAAA GATGCTCGTC
GACTGGCTCC GGATACACCG GGCCTTGGCG GATGCTCCCG GGGCCTTGGT CACGCTCGGG
CAATGCTACC TGTTCATGGG GTTCCACAAG GAAGCGCGGC ATTCCTTTCG GGAAGCCCTG
GCCCTTGACC CCGGTCTGGC GAACACACAA CCTTTCCGGG CGCTGCTCCG CACCGCCGAC
GAATTGGCCG GATCGGGCGG TCAACCCCTT GATAGCGGGG TGCGTTCAAG ATGA
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| Protein sequence | MRSQLLAKIR QRKGLVLLLA VEGFLLLLFP PSLILSASHI AGGDTPSHLP AAVALSESLA
TGGPLVTWMH GNYAGYPLFL NYFPFPFFIM SLLAAAVPLQ VAFKLVTLLP VFGLPAAIYF
CLRRFGYADL VAALGSALAL PFLVMKENAM WGGNIASTLA GEFCYGIGLV IAVVLTGKVF
HDIRDGRSLF RNSLLEGLAA LSNGYPLLQF GFASSYFLLR GRFIPYLVAL HAIAFGIISF
WIVPLIARLP WDTSFNHAWK FESWTEPLPV ALFPALPGIL FGWAAGRAWF GGNGPAGQRK
MPSGGPEQYL WWNVGIALAC FGLGPAFGLV DIRFLPFAHV FLILLGAIGW GKVLERFRHQ
GLWTAVAVLL MLGWAAAGSS TVRTWIQWNY SGFEAKPLRQ PFEQVNIHLQ GTENSPRVVY
EHAEENNGAG TVRAFELLPC FSGRSTLEGL YMQSSITSPF VFYLQSELTR TPSCPFPGYY
YSRFDADRAA KHLSLFNVRH VISVSGETGA ALDRSPHYHP EIAFPPYRIH TVVDSGNSYV
EPLRFRPHRI PWEGWKQTQF EWFRKSSLDV VLVVASEDSP GNYWRQLPPY DGTPENLPRV
ELTDASAPLV KASATLEKNR IVVETSMPRH PLWLKISFHP DWRIVEGAGE LYLVSPSFMM
LVPDTPRVVL RFDTSGGVYA AGRYATLLTG LLTVIVFCLR FRQRRRARAG PATGPGADRP
QPEIPSLQGE AESPASGTGQ TGDRAVYPAV PALVWLVLAA AVALYAWHRD ERDPLLLYHK
ALRAYERAEA GNPTHGDDTL PGRTPATRPG TTMAQAREWF LRCLNRYPLS PVVDHAAHYV
AASYMTENKW QDLIDFYESF LAAYPESRIY PEALYEMGAA ASLLGRTDVA SRRYWQAVTF
FPESERAGAA AARLVEISSP GEILGVAREY YARKDFFSAY PLLSALSVGP PSPVQTEAAL
LCAYVLFHQN RWPDSAKMLV DWLRIHRALA DAPGALVTLG QCYLFMGFHK EARHSFREAL
ALDPGLANTQ PFRALLRTAD ELAGSGGQPL DSGVRSR
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