| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_4003 |
|---|
| Symbol | |
|---|
| ID | 4457649 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | + |
|---|
| Start bp | 4858787 |
|---|
| End bp | 4859875 |
|---|
| Gene Length | 1089 bp |
|---|
| Protein Length | 362 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639704774 |
|---|
| Product | MscS mechanosensitive ion channel |
|---|
| Protein accession | YP_848104 |
|---|
| Protein GI | 116751417 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0668] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0737574 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.463755 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCTGCTCC TGGTGGTCGC GGCCGTCGAA CGTACCGTCC GCCACCTGAT CGCGATGCAG
ATGAAGGCAA GAAACGATGA AGAGGCGGGA CTGGGCTGGT GGCCGCTGTT CCTCGACGCC
CTGTCCAGAC CCCTGTCCCT CTTCATCAGG GTCTACGGCA TCTACTGGGC GCTGTCCCCG
ATCCTCAGCA CCTTCGAATC TTCGAAAGCG TACGCCGTCA TCCATCGCAT GGCCGGCAAG
GCGGCCGACA TCGGCGGCAC CATAGCGCTG TTCTGGTTCG TCTACCGCTT CATCCACGTG
GTGGACATGC AGCTGCGGCG CTGGGCCAAC TCGCGCAAGA ACAGCATCGA CGACATGCTG
GTGCCGCTGG TCGGCAAAAT ATTCCGGGTT TTCGTCATCG TCATCGGCGG CATCATGACC
GTCCAGAACC TGACCGGGAT CGAGATCGGC CCGCTGATCG CGTCGCTGGG GATCGGCGGT
CTGGCCATCG CCCTGGCCGG AAAGGATTCC ATTGCGAATT TTCTTGGAAG CCTGACGATT
CTGCTCGACA AGCCGTTCCA GGTGGGAGAG CGCATCGCCA TCGACAAGCA CGAAGGCTTC
GTCGAAGACG TGGGGTTTCG CAGCACGCGG ATTCGGACGC TGAGCGGCCA CCTGGTTTCC
ATCCCGAACG AAAAAATCAT CAACTCGACC CTGGAGAACA TCGGCCGGCG GCCCTATATC
CGCTGGCACA CGAACCTGAC GCTCACCTAT GGCACGCCGG CCGAAAAGGT GGAACGGGCC
GTGCGGATCG CTCGGGAAAT CCTGGAGAAC CATGAGGGCA TGCGCCCTGA GTATCCGCCT
CGAGTGCACT TCAATGCGTT CAACGACTGG AGCCTCAACC TGTCGATCTT CGCCTGGTAC
CACCCGGCCG ATCATTGGAA GTTCCAGGAG TGGGTGCAGA AGACCTGTCT CGAGATCATG
CGAAGGTTCG AGGCGGAGGG GATCGAATTC GCTTTCCCGA CCCAAACGGT GTACCAGTAC
AATCTGGATG GCCGGGATGC GGAGGCGCCG GACCGGCCGG CAAGGATAAG CCTCGGTTCC
AGGCAGTGA
|
|---|
| Protein sequence | MLLLVVAAVE RTVRHLIAMQ MKARNDEEAG LGWWPLFLDA LSRPLSLFIR VYGIYWALSP
ILSTFESSKA YAVIHRMAGK AADIGGTIAL FWFVYRFIHV VDMQLRRWAN SRKNSIDDML
VPLVGKIFRV FVIVIGGIMT VQNLTGIEIG PLIASLGIGG LAIALAGKDS IANFLGSLTI
LLDKPFQVGE RIAIDKHEGF VEDVGFRSTR IRTLSGHLVS IPNEKIINST LENIGRRPYI
RWHTNLTLTY GTPAEKVERA VRIAREILEN HEGMRPEYPP RVHFNAFNDW SLNLSIFAWY
HPADHWKFQE WVQKTCLEIM RRFEAEGIEF AFPTQTVYQY NLDGRDAEAP DRPARISLGS
RQ
|
|---|
| |