| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_3256 |
|---|
| Symbol | |
|---|
| ID | 4458424 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 3987634 |
|---|
| End bp | 3988905 |
|---|
| Gene Length | 1272 bp |
|---|
| Protein Length | 423 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639704028 |
|---|
| Product | 2-hydroxyglutaryl-CoA dehydratase, D-component |
|---|
| Protein accession | YP_847364 |
|---|
| Protein GI | 116750677 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1775] Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGACT ATGAATCCAT GTGGGAGAGG CTAAACCTCG ATTTAGACGC GCATGCAGCC
CTGCTCGAGG TGCTCGGCAA GTTCTACGGC GACATCTACA TGAGCCAGAC GGGTCGGCTC
AAGGGAATGG AATACCTCGA CTTCGTTCTG TCCGAGGTCC ACGGATTGCG GATCAAGGAA
CTTCAGGATG CGAAAGCCGG GGGGAAGAAG GTCATCGGCA CCTTTTGCGT GTTCGTCCCC
GAAGAACTCG TCCTCGCCGC GAGCGGTATC CAGGTGGGGT TGTGCGCGGG GGCCGAAGCG
GGTCGGGGCG AAGCGGAAAA AATCCTTCCA CGGAATACCT GTGCGTTGAT CAAGTCTTTC
GTGGGATTCA AGCTTTCCCG TCTCTGCCCG TATATCGAGT CGTGCGACCT GGTGGTCGGT
GAGACCACCT GCGACGGGAA GAAGAAAGCC TACGAAATGT TTGCCGAATA CGCTCCGGTG
TATGTCATGG AAATCCCCCA GATGAAAAAC CGTTGCGACC GCGAGCTGTG GAAGGCGGAA
GTGCTCCGGT TCAAGGACCG GGTCGAGGAA GTCACGGGCA ACCGGATCAC TGCGTCCGGC
CTGAAAGAGG CGATCCGCAT CGTGAACGCA CGCCGCAGGG CGCTCCAGCG CCTCAACCGA
TTGCGTGCGG CGGCCCCCGT GCCCATTTCG GGCCGGGACG TGCTGCTCAT CAACCAGATC
TCCTTCTATG ACGACCCCCA GCGCTTCACA GCCAAAGTGG GAGAGTTGTG CGACGAGCTC
GAGTCCCGGG TCGGGACCGG GCAAGGCATC GTGTCCGAAG AGACTCCGCG GCTCATGCTC
TCCGGATGCC CGATGGCGGT TCCGAACTGG AAACTGCCCT ATATCGTGGA GTCTTCGGGT
GCAGTCATCG TGGGAGAGGA GTCCTGCATC GGAACGCGCA ACACCCGTGA CCTCGTGGAC
GAAGGAGCCG GGACGCTCGA AGCGATGCTG GACGCCATCG TCGACCGGTA CATGCGGATC
GACTGCGCCT GCTTCACACC GAATACCGAA CGGCTGGAGC ACATCGTTCA AATGGCCGGT
GACCTCCGGG TACGCGGAGT AATCCACTAC GCCCTCTCCT TTTGCCAACC CTATGCCATG
GAAGCGTACA AGGTGGAAAA GGCGCTCAAA GCGAAGGGCC TGCCCGTGCT CACCATCGAA
ACCGACTACG GCATGGAGGA CGTCGAGCAG TTGAAAACCC GCGTGGAAGC CTTCGTGGAA
ATGCTTCACT GA
|
|---|
| Protein sequence | MNDYESMWER LNLDLDAHAA LLEVLGKFYG DIYMSQTGRL KGMEYLDFVL SEVHGLRIKE
LQDAKAGGKK VIGTFCVFVP EELVLAASGI QVGLCAGAEA GRGEAEKILP RNTCALIKSF
VGFKLSRLCP YIESCDLVVG ETTCDGKKKA YEMFAEYAPV YVMEIPQMKN RCDRELWKAE
VLRFKDRVEE VTGNRITASG LKEAIRIVNA RRRALQRLNR LRAAAPVPIS GRDVLLINQI
SFYDDPQRFT AKVGELCDEL ESRVGTGQGI VSEETPRLML SGCPMAVPNW KLPYIVESSG
AVIVGEESCI GTRNTRDLVD EGAGTLEAML DAIVDRYMRI DCACFTPNTE RLEHIVQMAG
DLRVRGVIHY ALSFCQPYAM EAYKVEKALK AKGLPVLTIE TDYGMEDVEQ LKTRVEAFVE
MLH
|
|---|
| |