Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfum_2616 |
Symbol | |
ID | 4459055 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Syntrophobacter fumaroxidans MPOB |
Kingdom | Bacteria |
Replicon accession | NC_008554 |
Strand | + |
Start bp | 3228026 |
End bp | 3229759 |
Gene Length | 1734 bp |
Protein Length | 577 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 639703387 |
Product | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA |
Protein accession | YP_846729 |
Protein GI | 116750042 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0639798 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.935147 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAATCTGC AGGACAGACA GGTCCTCAAG AATCTTCTTC CTTTGATCCG ACCGCATCGG CGAAAACTGG TCTTTGCCGT GCTGTGCATG ATCGTGTGTT CGGGTTCCAC GGCTCTGACC GCCTACCTGA TCAAGCCGGC CATGGACGAG ATCTTCGTGC GCAAGGACAT CGCCATGCTC TGGATCATCC CCCCGGCATT CCTGGCGGTA TCCCTGGTGA ACGCACTGTC GAAGTGGGGC AACGACTATT TCCTCAAGTC CGTGGGACTT TCGGTCATCG CAAACCTGCG CGAGAAGCTC TACAATCACA TCCAGGAACT GCCCCTTTCC TTTTTCGACC GAGCCTCGAC GGGCGTTCTC ATGAGCCGCA TCACCAGCGA CGTCAACGAG ATCGAGCATA CCGTCACCAC GGTTTTCACG GGGCTCATCC TGGACGGCTG CAGCGTGATC GCGCTCGCCT GCGTGGTCTT TTACCAGGAC TGGAAACTGG CCCTGATCGC CATCCTGGTT TTGCCCGTGG CATTCTATCC CGTTTTCCTG TTCGGCTCCC GGCTCCGCAG GTTCGCCGTC AGGCGGCAGG AGACCATGGG CAGTCTCAAC GTCGTTCTCC ACGAAAGCTT CAGTGGAGCG CGCATCGTGA AGGCGTTCGG CATGGAGAAT CATGAGAAGA AGCGATTCGC CGAACAGAAC CGCAGGTTCC TGCACTATCA ACTGAAGTCG GAATGGATCG ACGCGCTCTC CACTCCCCTC ATGGAGTTCA TCGGGTCCAT CGGCGTGGCC GCGGTGATCG CCTACGGCGG GTACCAGGTG GTGCAGGGGC TCTCGACGCC GGGCACCTTT TTTTCCTTCA TGGCCGCTGT GCTGATGCTC TACCGCCCGA TCAAGGATTT GAGCAGGATC AACAGCGTGC TGCAACGGGG CGTGGCATCG ACCACGAGGG TTTATGCCAT CCTCAACGAG CGCAATTCCC TGGTGGAAAA GCCGGACGCC CCGGACCTCC CTCCCATCAG CCGGGAAATC GAATTTCGCC GCGTCTCTTT CGCCTATGAC GAAAAACCGG TGCTCCATGA CATCGATTTG AAGGTTCGGG CCGGAGAAGT CATCGCCCTG GTGGGCAGCA GCGGCGGGGG AAAGACCACG CTGGCAAATC TTGTGCCCCG CTTCTACGAC GTGTCCGCGG GGGCGATACT GGTTGACGGC ATGGATATTC GCGACGTGCG CATCAGGTCC CTGCGCGGCC AGATCGCCAT CGTCACGCAG CAGAGCTTTC TGTTCAACGA CACCGTGCGC AACAACATCG CTTACGGGGA CATCGGCAGG CCCGAGCGGG ACATCGTCGA TGCGGCCCGG GCGGCCCATG CCTACGATTT CATCCGGGAA CTGCCCCAAG GCTTCGACAC GATCATCGGG GAACAGGGAG TCATGCTCTC GGGGGGGCAG CGTCAGCGCA TCTGCATCGC CCGAGCGCTC CTCAAGAATG CCCCCATTCT CATCCTGGAT GAAGCCACCT CATCGCTCGA CAGCGAGTCG GAGCTCGAAG TGCAGCAGGC TCTCGACAAC CTGCTGCGGG GGCGCACGAC CTTCGTCATC GCCCACCGGT TTTCGACCAT CCAGTCGGCC GACCGCATCC TGGTCGTCGC GGACGGGAAG ATCGTGGAAG AGGGCACGCA CGCTGACCTC ATGGCCCGAT CGGGCGAATA CCGACGGTTG TACGACATCC AGTTTCAGAA ATAG
|
Protein sequence | MNLQDRQVLK NLLPLIRPHR RKLVFAVLCM IVCSGSTALT AYLIKPAMDE IFVRKDIAML WIIPPAFLAV SLVNALSKWG NDYFLKSVGL SVIANLREKL YNHIQELPLS FFDRASTGVL MSRITSDVNE IEHTVTTVFT GLILDGCSVI ALACVVFYQD WKLALIAILV LPVAFYPVFL FGSRLRRFAV RRQETMGSLN VVLHESFSGA RIVKAFGMEN HEKKRFAEQN RRFLHYQLKS EWIDALSTPL MEFIGSIGVA AVIAYGGYQV VQGLSTPGTF FSFMAAVLML YRPIKDLSRI NSVLQRGVAS TTRVYAILNE RNSLVEKPDA PDLPPISREI EFRRVSFAYD EKPVLHDIDL KVRAGEVIAL VGSSGGGKTT LANLVPRFYD VSAGAILVDG MDIRDVRIRS LRGQIAIVTQ QSFLFNDTVR NNIAYGDIGR PERDIVDAAR AAHAYDFIRE LPQGFDTIIG EQGVMLSGGQ RQRICIARAL LKNAPILILD EATSSLDSES ELEVQQALDN LLRGRTTFVI AHRFSTIQSA DRILVVADGK IVEEGTHADL MARSGEYRRL YDIQFQK
|
| |