| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_2183 |
|---|
| Symbol | |
|---|
| ID | 4459092 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | + |
|---|
| Start bp | 2673322 |
|---|
| End bp | 2675559 |
|---|
| Gene Length | 2238 bp |
|---|
| Protein Length | 745 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639702949 |
|---|
| Product | lipopolysaccharide biosynthesis |
|---|
| Protein accession | YP_846300 |
|---|
| Protein GI | 116749613 |
|---|
| COG category | [D] Cell cycle control, cell division, chromosome partitioning
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0489] ATPases involved in chromosome partitioning
[COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
|---|
| TIGRFAM ID | [TIGR01007] capsular exopolysaccharide family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.903272 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAACC ATCCTTCGAA CGAAATTGCT GTGCCGGCTT CGGCGTCGGT GACGGCGGCC
GCGCAGACGT ATTACGCAAT GGAGGAGGAA CAGGTCGTCC ATCTCAGGGA CTACTGGCAC
ATCCTGGCCA AGCGGAGACG TTGGTTCATC GGGGTTTTCT GGGGGGTGAT GCTTTCGACC
CTGCTGGTGA TCCTGCTGAT GGATCCCGTC TACAAGGTGA CCACCACGCT CCAGATCATC
CAGGACAACC CTTCGGCCAT CCTCGGCGGA AGCAGCGCGG ACCCCCTGGG GGCGCTGACC
GGATCGAGCG AGCTCGACCG CTTCTACGAG ACCCAGTACA ACATCCTGCA GTCCCGGGCC
ATCGCCTACG GGCTCATCGA TTCGTTGAAC CTGAAGGAGC ACCCCTCCTA CAAGGAGATG
GAAGCCGACA ACAGGAACGA CCCGCCCGAA GTCGTCCGGC AGAAGTACGC CGAGTTCCTG
CTGGACAACC TCAAGATCGA GCCGGTCAAG AATTCCTACC TGGTGAACGT CTCTTTCAAA
TCGACGGACC AGAAGCTCGC GCAAAAGCTG CCGGAGGCCA TCCAGGGAGA GTACCTGAAA
CTGTCCATGA CCACGCGGCA GCAGTCCTAC ACCCTGTTGC GGCAGTGGCT GGAGGACGAG
CTGACGCGCC TGGGAAAGAA ACTGGAGATT TCCGAGCGGA GCGTGTACGC GGACGGGCGG
AATCACGACT TTTTGTCCCT GGAGGAAGGC CAGTTCAACG TGATCGTCCA GAAATACGTG
GAGGTGAGCA AGGCGCTGAC CGTGGCCCAG TCGGAGCGGG CGATCAAGGA GGCGCAGTCC
CGGCAGATCA GCGAAAAGGG AGCCGACGCC CCCCTGATCA CCAACCACCC CCTGGTCACG
CAGCTCAGGC AGCAGTTGAT CGATCTCCAG GGCCAGGTCA CGGGAAGCGG GCAGATATTC
GGTTCCAATT ACCCGGAACA CAAGGGGCAG AGCGCGCGGA TGAGCGAGCT GCGCGAGCGG
CTCGGACAGG AGGTGAGGCG CATCGAAGCG AGCGTCCGGG CGGACTACGA GGCGGCCCTG
CGCGCGGAAA ACCTGCTTCA GAAGGAATTC GACCTTCAGA AGGAGAAGGT CATCGATTTG
CAGAACGGCC TGGTGCAACA CCACATTCTC AAACGCGACC TGCAGACGAA CCAGACCCTC
TACGAGGGGC TTCTCGCCCG CATGAAGGAG GCGAGCATCG CGAGCACCAT GGTGGCGAGC
AACGTGTCGG TGGTCAACAC GGCGGAGACG CCCTACAAGC CGTGGGTGCC CAAGCCCCTG
CTCTTTCTCG GCCTGGCCGC GGTCATCGGC GCCCTGCTCG GCACCATGAC GGCCTTTTTC
GTCGAATACC TGGACAGCTC CATCAAGAAC ACCGAGGAAC TGGAAAGGAA TTGCCGGATT
CCCGTGCTGG GAGTGGTGCC GCTGGCCGAC GCCGGGGAGG TGCGGGCGCA GGGAAACCAC
GTGGACCTCA TCGCGCATTA CAAGCCCATG TCCATGGTGG GCGAGGCCGT TTTCCAGATC
CGGTCGGCGA TCATGCTGTC GGTTTCCGGG GCTCCGCCCC AGAGTATCGT GGTCACCAGC
GCCAACCCGA TGGAAGGCAA GACCTTCGTG GCGGCGAACA TCGCCGTGGC CCTGACCGCG
AACGACCACA GATGCGTGAT CCTGGATTGC GATTTGAGGA AACCCAGGCT GCACAAGGTT
TTCGAGCAGG ACAACCGGAT CGGCCTGAGC AGCCACCTCA CCGGCCGTGC CGACCTGGAG
AAGATCATCC GACGCACCGT GGTCCCGAAC CTGCATTTCA TCCCTGCCGG CCCGATGCCT
CCCAACCCTA ACGAGTTCTT CATGTCCAGC GCCTTCGAGA ACCTGGTCCG GCGCCTCCGG
GAGGAATACA ACCATATCAT TCTCGATTCG CCGCCGGTCA TCGGGTTTGC GGATGCCCGT
TCGCTTTCGG TCCATGCGGA CGGGGCGGTG CTCGTATTCA GGCACCACTG CACCACGGGC
GAGGCCGGGC GTCTTGCGGT GCAGCTGATG ACGCAGAACC ACTGCCATAT TTTGGGCGGG
ATTCTGACCA TGGCCAGGAA GGACCTCATG GGGCCCGGCG CCTACTACGG CTACTACCAA
AACTACCACA GGTACTACGG GGGGTATCGT TCGGAGGGGG AAGACGGTTC CCGGAAAAGA
TCGGGGCGCG CGGGGTAG
|
|---|
| Protein sequence | MQNHPSNEIA VPASASVTAA AQTYYAMEEE QVVHLRDYWH ILAKRRRWFI GVFWGVMLST
LLVILLMDPV YKVTTTLQII QDNPSAILGG SSADPLGALT GSSELDRFYE TQYNILQSRA
IAYGLIDSLN LKEHPSYKEM EADNRNDPPE VVRQKYAEFL LDNLKIEPVK NSYLVNVSFK
STDQKLAQKL PEAIQGEYLK LSMTTRQQSY TLLRQWLEDE LTRLGKKLEI SERSVYADGR
NHDFLSLEEG QFNVIVQKYV EVSKALTVAQ SERAIKEAQS RQISEKGADA PLITNHPLVT
QLRQQLIDLQ GQVTGSGQIF GSNYPEHKGQ SARMSELRER LGQEVRRIEA SVRADYEAAL
RAENLLQKEF DLQKEKVIDL QNGLVQHHIL KRDLQTNQTL YEGLLARMKE ASIASTMVAS
NVSVVNTAET PYKPWVPKPL LFLGLAAVIG ALLGTMTAFF VEYLDSSIKN TEELERNCRI
PVLGVVPLAD AGEVRAQGNH VDLIAHYKPM SMVGEAVFQI RSAIMLSVSG APPQSIVVTS
ANPMEGKTFV AANIAVALTA NDHRCVILDC DLRKPRLHKV FEQDNRIGLS SHLTGRADLE
KIIRRTVVPN LHFIPAGPMP PNPNEFFMSS AFENLVRRLR EEYNHIILDS PPVIGFADAR
SLSVHADGAV LVFRHHCTTG EAGRLAVQLM TQNHCHILGG ILTMARKDLM GPGAYYGYYQ
NYHRYYGGYR SEGEDGSRKR SGRAG
|
|---|
| |