| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_1870 |
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| Symbol | |
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| ID | 4459811 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | + |
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| Start bp | 2287932 |
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| End bp | 2289992 |
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| Gene Length | 2061 bp |
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| Protein Length | 686 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 639702637 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_845990 |
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| Protein GI | 116749303 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAGAA CGCGACGGCA CGGCAGGGCC GAGGTCCTGC TGGTCTGCCT GTTTCTCGCG
ATTTCCACGG CCGGTGTTTA TTGGCAGGTG AAGGATCACG AGTTCATCAC CTTCGACGAC
AACGAATACG TCACCGCCAA TCCGCAGGTC CTGCGGGGTT TGACTTCGGA CGGAGTGAAA
TGGGCGTTCA CCTCCAGGGA TGCGGGGAAC TGGCACCCCC TCACCTGGCT CTCCCATATG
CTCGACGTGC AGATGTTCGG CCTGAACGCG GGCGCTCACC ATTTGATGAA CGTCCTGTTC
CACGTAGCGA ATGCCCTGCT GCTTTTCCTG GTGCTCCACC GCATGACCCA TGCGCTTTGG
AGGAGCGCTT TCGTTGCGGC ACTCTTCGCC CTTCACCCGC TGCACGTGGA ATCCGTCGCC
TGGGCTTCGG AAAGGAAGGA TGTCCTGAGC ACCTTATTCT GGATGCTCAC CATGGGCGCC
TACGTCCTTT ACGCTGAAAA GCCGGGGATC ATCCGATACC TTACCGCCTT CTTTTTGTTC
GCTCTGGGCC TTCTGGCCAA ACCCATGCTC GTGACTCTCC CGTTCGTGCT CCTTCTTCTC
GACTACTGGC CCCTGAATCG TCTCCGGCGG CAAGCGGCGC CTCTGAAACC CGTGACGCCC
GAAGCTCCCT GGGACGACAC CGCGGAAGCG GAAAAAACCG GAGCCCCCGG CCGGGCCGTC
GTAAGCCGCC TCCTGGTCGA GAAACTTCCG TTCCTCGCGC TGAGTATCCT CTCGATCGGC
GTGACCTTAT ACGCTCAGCA ACGAGCGCTG ACCGACGTGC CGGTGGCGGA TCGGTTGGGA
AACGCCGTCA TTTCCACCAT CAAGTACATT GCCCTGATGG TCGCTTCCAC GGACCTGGCG
ATCTTTTACC CTCACCGGGG CATGCCGCCC TGGTGGCTGC TGGTCCCGGC AGCCGGTCTG
CTGCTCGAAA TCACGCTTCT CATCGCCTGG AAAGGGCATC GTGCTCCATA TTCCAGGACC
GGCTGGTTCT GGTACCTCGG CACGCTGGTG CCGGTCATCG GCCTTGTGCA GGTGGGCGCT
CAGGCGATGG CCGACCGCTA CACGTACGTG CCTCTCATCG GGCTGTTCAT CCTGACGGCC
TGGGGCGTCG AGGACTTCAC GCGAGCATGG AGAAAGCGCT CGGCACTGCT GGCGGCGGCA
TCGGCCCTGA CGCTTGGTTT CCTGACGTTC CTCAGTTTCA TCCAGATATC CCACTGGCGC
ACCGGCATCG AACTGTTCAC CCATTGCGCG AACGTGACGG AGAACAACTC GTGGGCCTAT
CTTCAGCTCG GGATCGCTTT GGACGATGCC CGACGTCCCG AAGAGGCCAT CGAGAGCTAC
CGGGCGGCTC TGGCCATCAG TCCGAATCAC GCCGTCACAC ACTACAATCT GGGGCTTGTG
CTTGCCCGGA GGGGAAGGGT CGAAGAGGCC GAGAAGCACT ACCGGGAAGC GGTGAGGCTC
CAGCCCCGTG CCTCGAATTT TCGCAACAAC CTCGGCCTGG TTCTAGGCCG CCAGGGGAAG
ACCGAGGAAG CCGAGGCCGA ATACCGGGAA GCTCTGGCCA TCCGGCCGGA TTATGCCAAC
GCCCACAATA ACCTCGGCGT GCTGCTGGCT CAGAAGGGAA AAACCGAGGA GGCCATCGCG
CACTACCGGG AAGCCCTGGC CGCCCGGCCG GGTTATTCAA GCGCTCACAA CAACTGGGGA
TATTGCCTGA TGATGGCGGA CCGGGTCGAG GAAGCCATCC CGCACTTCAT CGCCGCACTC
CGGTTGAAAC CCGATGACGC CAACATTCAC GCCAACCTCG GAACCGCCTT CGTCAAGCAG
AGGAACCCGG ACCGTGCGGT GATGCATTTC GAAGAGGCCA TCCGGCTTGC CCCCAGCAAC
ATCAATGTCC GCGCCACACT TGGAAAACTC CTGGCCGTTC AGGGAAAACG CGACCTGGCG
AGCATCCAGT TCAAGGAAAT CCTTCGCCTG GACCCCGATA ACGAAGAAGC GACTCGCGCC
CTCACGGTCC TTTCCAGATA A
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| Protein sequence | MMRTRRHGRA EVLLVCLFLA ISTAGVYWQV KDHEFITFDD NEYVTANPQV LRGLTSDGVK
WAFTSRDAGN WHPLTWLSHM LDVQMFGLNA GAHHLMNVLF HVANALLLFL VLHRMTHALW
RSAFVAALFA LHPLHVESVA WASERKDVLS TLFWMLTMGA YVLYAEKPGI IRYLTAFFLF
ALGLLAKPML VTLPFVLLLL DYWPLNRLRR QAAPLKPVTP EAPWDDTAEA EKTGAPGRAV
VSRLLVEKLP FLALSILSIG VTLYAQQRAL TDVPVADRLG NAVISTIKYI ALMVASTDLA
IFYPHRGMPP WWLLVPAAGL LLEITLLIAW KGHRAPYSRT GWFWYLGTLV PVIGLVQVGA
QAMADRYTYV PLIGLFILTA WGVEDFTRAW RKRSALLAAA SALTLGFLTF LSFIQISHWR
TGIELFTHCA NVTENNSWAY LQLGIALDDA RRPEEAIESY RAALAISPNH AVTHYNLGLV
LARRGRVEEA EKHYREAVRL QPRASNFRNN LGLVLGRQGK TEEAEAEYRE ALAIRPDYAN
AHNNLGVLLA QKGKTEEAIA HYREALAARP GYSSAHNNWG YCLMMADRVE EAIPHFIAAL
RLKPDDANIH ANLGTAFVKQ RNPDRAVMHF EEAIRLAPSN INVRATLGKL LAVQGKRDLA
SIQFKEILRL DPDNEEATRA LTVLSR
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