| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_0486 |
|---|
| Symbol | |
|---|
| ID | 4461493 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 584459 |
|---|
| End bp | 585718 |
|---|
| Gene Length | 1260 bp |
|---|
| Protein Length | 419 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639701242 |
|---|
| Product | lytic transglycosylase, catalytic |
|---|
| Protein accession | YP_844621 |
|---|
| Protein GI | 116747934 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1388] FOG: LysM repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.232763 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0521482 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGAATC GAATCGGTTT CAGAGGCGTT GCTCCCGCCG TGCTCGGCAT CCTGCTGTCC
ATCGTCTGCT CGGGCTGTAC CACCACCCCG CAGCCATCCC CGAGCGTCTC CCCTCAGCCT
CAGCCCCCGG CCGCCAGGGA ACCCGTTCAC GTCGCGCCGC AGGCCGCACC CGTATCCTGT
GCCGCCACGT TTCCATATTA CCCGCCCCCC GACCGGCTGG ATCTCTGCGG GGAGCCGGTT
CCATTGCAGC ACGACTCCGT GAGGGAACGC TTCGACCGTG AGTTCACCAC GGTGGTCTAT
AACCATGCCC AGGTTTACCT CTGGTTGAAG CGCATGGATC GCTATTTCCC GCAAATCGAG
GAACGCCTGA AGTCCATGGG TCTGCCGGAC GACCTGAAGT ACGTGGCGAT CGTGGAAAGC
GACCTGGTGC CGAATGTGGT TTCCCCCAAG GGAGCGGCCG GCCCCTGGCA GTTCATGCCC
GCGACCGGAT CCGCCTACGG CCTGCATCAG CAGGGCTCCA TCGACAAGCG ATACGATTTC
GAGCGATCCA CGATCAGCGC TTTCCGATAC CTGAGCGATC TGAACCGCAA ATACAACAAC
TGGGCACTGG CAATCGCCGC GTACAACTGC GGCGAAAAAC GGATCCTGGA CGAATCCCGG
GCACAGGGAA CAAGGGACTA TTACCACCTG AAGCTTCCGA CGGAGACGGA GCGCTACGTA
ATGCGAATCC TCGCGGTCAA GGCGGTCCTC GGCAATCCGA CCCGATACGG GTACTGCCTT
CCCAAGGGAA TGGGCTACGG TGAGCTGAAG GTGGACCGCG TGACCATGAA CCTGTCCTGT
TCCACCCCCA TCCAGACCGT TGCCGCATGC GCGGGCACCA CGTACCGGGA ATTCAAGCGG
CTCAACCCCG AGTTCCGTGC CGAGGTCATC CCTTCCGGCT GCCACGAGGT CAAATTCCCC
GCCGGATGCG GTCCGGCCTT CGAACAGAAT TTCAGCGCGA GCCGGGCGTC CATGTCCTCC
TCCGTTCCGG AGCCGTCGTC GGATGAGGCT CCAAGGGAGC CGGCCCAGGT GCGTCAGCCA
AAACCCTCGC CCCTCAAGGC CAAGTCCCGA CAGCCCGCGG AAACTTTCCA CACGGTCAGG
AAAGGAGACA CTCTGTTCAG CATAGCCAGG CATTACAGGG TGAACGCGCA GGACATCAAG
AAGGCCAATC GTCTCAGGGG CAACGACATC GTTCCGGGAC AGAAGCTGAA GATCCCCTGA
|
|---|
| Protein sequence | MLNRIGFRGV APAVLGILLS IVCSGCTTTP QPSPSVSPQP QPPAAREPVH VAPQAAPVSC
AATFPYYPPP DRLDLCGEPV PLQHDSVRER FDREFTTVVY NHAQVYLWLK RMDRYFPQIE
ERLKSMGLPD DLKYVAIVES DLVPNVVSPK GAAGPWQFMP ATGSAYGLHQ QGSIDKRYDF
ERSTISAFRY LSDLNRKYNN WALAIAAYNC GEKRILDESR AQGTRDYYHL KLPTETERYV
MRILAVKAVL GNPTRYGYCL PKGMGYGELK VDRVTMNLSC STPIQTVAAC AGTTYREFKR
LNPEFRAEVI PSGCHEVKFP AGCGPAFEQN FSASRASMSS SVPEPSSDEA PREPAQVRQP
KPSPLKAKSR QPAETFHTVR KGDTLFSIAR HYRVNAQDIK KANRLRGNDI VPGQKLKIP
|
|---|
| |