Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfum_0287 |
Symbol | |
ID | 4460889 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Syntrophobacter fumaroxidans MPOB |
Kingdom | Bacteria |
Replicon accession | NC_008554 |
Strand | - |
Start bp | 341876 |
End bp | 343729 |
Gene Length | 1854 bp |
Protein Length | 617 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 639701042 |
Product | UbiD family decarboxylase |
Protein accession | YP_844423 |
Protein GI | 116747736 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0043] 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases |
TIGRFAM ID | [TIGR00148] UbiD family decarboxylases |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.514139 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCATGA AGACCGCATT CCGAAACCTG CAAGACTTTA TCGCCGACCT CGAGCGGGCC GGAGAATTGC TGCGGATCAA GGCCCCGGTC TCGAGCGACC TCGAAATCAC GCAAATCACC GACCTTGCCT CCAAGAGCCC CGGAGGAGGC AAGGCTCTGC TCTTCGAAAA CGTTGAAGGC TCGCGCTTTC CGGTCCTGAC CAACGCTTTC GGCAGCGAAC GGCGCATCTG CATGGCGCTG GGCGTCTCCC ACCTCGACGA GCTCGCCCGC CGCCTCAAGT CCTTCATCGA GATGAAACCG CCGAAGTCCC TTGCCGATGC GCTCCGGCTG ATCCCGCTCG GGCTGGAGCT CCTCCGCTTC CTGCCTCGAA AAACCCGCAA GGCGCCGTGC CAGGAGGTTG TCACCACCGG CCGCGACGTG GACCTGTCCA TGCTGCCGGT GCTCAAGTGC TGGCCATCGG ACGGAGGGCC GTTCGTAACG CTCCCGGTGG TGATCACGCG CAGCCTCGTC ACCGGCAAGC GCAACGCGGG GATGTACCGG CTGCAGGTTT ACGACCGCAA GACCACGGGG ATGCACTGGC ACATTCACAA GGACGGGTCC CACTACTTCC AGGAATTCAG GGAACGGGGC AAGCGCATGC CCGTGGCGGT GGCGATCGGG ACCGATCCAG CCGTGACTTA CGCCGCCACG GCCCCCCTGC CCCGAGGCAT CGACGAAATG ATGCTGGCCG GGTTCATCCG GCGAAAGCCC GTGCCGATGG TGCGTTGCCT GACCGTCGAC CTCGAGGTGC CGGCGGAATC GGAATTCGTG CTGGAAGGTT ACGTGGATCC CGGAGAACTG CGCGTGGAAG GGCCTTTCGG AGATCACACC GGCTACTATT CGTTGGTGGG GGAATACCCG GTGTTTCACG TCACCGCCCT GACGCACCGG CGCAATCCGG TGTATTTCGC AACGGTCGTC GGACGCCCCC CCATGGAAGA TTGTTTTCTT GCCAAGGCCA CCGAGCGTAT CTTCCTGCCG CTCCTGAACG CCGTATTCCC GGAGATCGGG GACTACTGGA TGCCGTGGGA AGGGGTCTTC CACAACATCA CGGTCCTGTC CATCCGCAAG GAATATCCGG GCCATGCGCG CCGCATGATG AGCGCCATCT GGGGGCAGGG ACAGATGAGC TTCTGCAAGG CCGCGGTCCT GGCGGATCCT TCGGTGGATC TCGGTCACCC CCGGCGGGTG CTCGAACACA TCCTGAACAA CATCGACATC GAAAGCGACA TCACCCTCTC CGAAGGCATC CTGGACGTCC TCGATCACAG CGCCCCGGAA CCTTTGTTCG GCAGCAAGAT CGGCATCGAC GCAACCCGGC GGCTTCCCGG CGAAAAGGAG CGTCCCGCCG CCCGGCCTGT CGGCGCTCTT CCGGACGCGG AGCGGATCGC GTCCGCCCTG CGGGACGTCT CGGAGTTCCT CGTGGCTTTC CACGTTCCGG ACCTTGAAGT CAGGAACAGG CTGCTGTGCG TGAATTTCCT CAAAAACGGG TCGGTACCGG CGCAAAGCTT CGCGCAACAA CTCCTCGATC ACCCGGTCCT GCAGCCGTTT GCGATCTTTC TGCTCTACGA CGCAACCATC GATTTGCGGG ATGGGTCGCT CATTCTCTGG AAGCTGTTCA ACAATGTGGA CCCGCGAAGA GATACAGTGC GTTCGGGCGG CAGGATCGTC GTCGACGCGA CGAAAAAGGG GCCCGAAGAC GGCCATCACC GTCCCTGGCC GGACGATATC GTGATGGATC CCGAAGTGGC GGCAAGGGTG GCGCGGCGCG CAAAGGAACT CGGGATCGAA GCGTTTCTGC CGGCCGGGAG CTGA
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Protein sequence | MSMKTAFRNL QDFIADLERA GELLRIKAPV SSDLEITQIT DLASKSPGGG KALLFENVEG SRFPVLTNAF GSERRICMAL GVSHLDELAR RLKSFIEMKP PKSLADALRL IPLGLELLRF LPRKTRKAPC QEVVTTGRDV DLSMLPVLKC WPSDGGPFVT LPVVITRSLV TGKRNAGMYR LQVYDRKTTG MHWHIHKDGS HYFQEFRERG KRMPVAVAIG TDPAVTYAAT APLPRGIDEM MLAGFIRRKP VPMVRCLTVD LEVPAESEFV LEGYVDPGEL RVEGPFGDHT GYYSLVGEYP VFHVTALTHR RNPVYFATVV GRPPMEDCFL AKATERIFLP LLNAVFPEIG DYWMPWEGVF HNITVLSIRK EYPGHARRMM SAIWGQGQMS FCKAAVLADP SVDLGHPRRV LEHILNNIDI ESDITLSEGI LDVLDHSAPE PLFGSKIGID ATRRLPGEKE RPAARPVGAL PDAERIASAL RDVSEFLVAF HVPDLEVRNR LLCVNFLKNG SVPAQSFAQQ LLDHPVLQPF AIFLLYDATI DLRDGSLILW KLFNNVDPRR DTVRSGGRIV VDATKKGPED GHHRPWPDDI VMDPEVAARV ARRAKELGIE AFLPAGS
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