Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_4042 |
Symbol | |
ID | 4280933 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 4820709 |
End bp | 4822802 |
Gene Length | 2094 bp |
Protein Length | 697 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 638136867 |
Product | TonB-dependent siderophore receptor |
Protein accession | YP_752706 |
Protein GI | 114565192 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.296308 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTATTTA AATATTCAGT TATAGGTTTA GCAGTTGGTT CAGCATTAAT GACGATGCCG GTAATGGCTG AAGTATCTAG TGATACAAAC ATAGAACGTA TTAATGTTGT GGGTCGAACT TTTAACGATT ATAAAGTCGG TACAGCATCT GGTGCTATGC GCGGTGATAT CGACCTAATG GATACCCCAC AGTCAGTCAA TGTTATCCCT GATTTTGTCA CCGATGAACA ATTGGCAACT AACCTTGCTG AAGTATTAGT GAATGATTCA AGTGTAACAG CAGGGACTAC ACGCTGGAAC CGCCAGGTTT TCAGTATCCG TGGCTTTGAA TTAGATTCTG GTAATGGTTA TTTAATTAAT GGCCACCAGC AATGGTCTCA CTACATACAA CCTATTGAAA CTCTACAACA AGTTGAAGTG CTGAAAGGTC CTTCTAGTAT GTTGTATGGC CAATCTGGTC CAGGTGGTTT GGTGAATATG GTCACCAAAA AGCCGACTTA TGATTCTATG CTTAATGTAG GTGTCGACAC TGATGGTTAC GGCTCTACCC GTGCACAGAT TGATGCTGGA GGCAGTTTAA ATGATGCCCA AAGTATTCGA TATCGTGGTG TGTTAGTAAA GCAAGACACA ACATATTGGC GTGAATATTC AACCACAGAA GAAAACCAAG ATCGTGATCG TTGGTTAGGT TATCTTAATA TGGAATTTGA TTTAACAGAT GATGTATTGC TATCTGTTAA ATACGATCAC ACTCAAGATA AAGCCAGTAT TGATGCGGGT GGTTGGTTAG ACTCTCAAGG TAATGTTATA GGCAATAATA AAACTATTTG GGATGCTCCT TGGGCCTTTA CCGATAATAC GGTTTCAAAT TTAGGTGCAG ATCTTACTTG GCATATTAGT GACGACTGGA AAATTAAAGC CGGTTATAAC GATCAGCAAT TCAATCGTCA ACGTTTCGAC TCTGCGCCAC AATATACCAC TGCTCCTTTT AGCAACGGTT ACAGCATTAA ACCATTTGAT CGCTATGATG ACTGGCAACA TAAAACCGCT TATATCGATT TTACTGGCGA GTTTGATTTT GCAGGAGTTC AACACCAGTT ATTGATAGGT GCAAACTATC TAGATTATTT ATATCAACAA CAGATCCAGC GTGGAACAAG CCAAACAGTT ATTCCTGGGC AGCCAGTTAT TAAGCCTGAT CTTGATTATC ATCTAAGTAG CAAAGGCGAT CCGAGCGAAT ACAAATATTA TGGTTTCTAT TTACAAGATT TAATGACCGT AAACCAACAT TGGAAGTTGC TTGCTGGTGT ACGTTATGAC GAGCAAAAGA AAGACGGCTT AGGTCAGAAC AGTTATGCGG TATCGCCTAA GTTTGGGGCT ATTTACTCGC CAATGGAACA TGGCAGTATT TACGTTAACT ATTCAAAAAG TTTTACTCCA CAAGGTGCTG TTAATAATCA ATTTGACGTT AACGATGAAC TGGATTTAAA ACCTGAATAT GGTATTCAGT ACGAAGTGGG TACCAAATGG GAACTGTTTG ACGATAGCTT ATTACTCACT GCGGCTGTAT TTGATATCAC TGTTGAGAAT ATTACAATAT CTGAAGTATT ACCGACTCCA ATAGATTCCT ATACTGATAT CACTACCCAA GGTGGTGAGC AGAAACATCG TGGATTTGAA GTGGGCGCTC AAGGTCAGTT AAGTGACGAT TGGTTCATGA CATCTTCAAT GATGTACCTT GATGCTGAAT ATCACACGGG TGATGAACGT GAAGGTAAAA CACCTGTTGA TGCGCCGGAA TGGTCGGCTA ATATCTGGAC TCGCTATGAA ATGACTGAAT ACTTTGCGAT AAACTTTGGT GCTATCTATG TTGGTGAGCG TTTTGCCAAC ACCGATAACA GTATTAGTAA AGACGGTTAT ATCCGTTTCG ATATTGGCGC AGCCTATACT ATGGATGTTA TGGGGAAAGA CGTCAGTGTA CGCGCCAATG TCAGAAATCT ATTCGATACC GACTATATTG AAGGTGGTCA GTATAATATG GTCACCATTG GCCAAGATCG TAATTTCAGT GTTGCCGCCG AAGTTAAATT CTAA
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Protein sequence | MVFKYSVIGL AVGSALMTMP VMAEVSSDTN IERINVVGRT FNDYKVGTAS GAMRGDIDLM DTPQSVNVIP DFVTDEQLAT NLAEVLVNDS SVTAGTTRWN RQVFSIRGFE LDSGNGYLIN GHQQWSHYIQ PIETLQQVEV LKGPSSMLYG QSGPGGLVNM VTKKPTYDSM LNVGVDTDGY GSTRAQIDAG GSLNDAQSIR YRGVLVKQDT TYWREYSTTE ENQDRDRWLG YLNMEFDLTD DVLLSVKYDH TQDKASIDAG GWLDSQGNVI GNNKTIWDAP WAFTDNTVSN LGADLTWHIS DDWKIKAGYN DQQFNRQRFD SAPQYTTAPF SNGYSIKPFD RYDDWQHKTA YIDFTGEFDF AGVQHQLLIG ANYLDYLYQQ QIQRGTSQTV IPGQPVIKPD LDYHLSSKGD PSEYKYYGFY LQDLMTVNQH WKLLAGVRYD EQKKDGLGQN SYAVSPKFGA IYSPMEHGSI YVNYSKSFTP QGAVNNQFDV NDELDLKPEY GIQYEVGTKW ELFDDSLLLT AAVFDITVEN ITISEVLPTP IDSYTDITTQ GGEQKHRGFE VGAQGQLSDD WFMTSSMMYL DAEYHTGDER EGKTPVDAPE WSANIWTRYE MTEYFAINFG AIYVGERFAN TDNSISKDGY IRFDIGAAYT MDVMGKDVSV RANVRNLFDT DYIEGGQYNM VTIGQDRNFS VAAEVKF
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