| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3981 |
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| Symbol | |
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| ID | 4280872 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4744281 |
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| End bp | 4745843 |
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| Gene Length | 1563 bp |
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| Protein Length | 520 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 638136802 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_752645 |
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| Protein GI | 114565131 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGTTAA AACGTTTTTC GCTTTTATTG TTGTCTTCAC TATTACTTAC AATAACCATG
TTGTTGGTGA GCATTTACTA TTTTTTCTAC CTCCCTGGAA TAAAAACTGA GGTGTTAGAT
CAGCAACAAC AAGAATATAA TTTGTTGTAT TCGGCATTAT CGTTATCAAA AAATAGCTTA
ACCACCTTAT GTTACGATTA CGCCGTGTGG GATGAGCTAG TTGAGTATGT TGGTAATCCG
ACTGATGATT TTGTTCAAAG CAATATGCCT AATAATGCAT TTGAAGCTGC AAATATTGAT
GCTGTTTTTG TCATCGATAC TAATAATAAG TTAATTTGGG ATTATCAGGA TGACTCATTA
AAATCATCCA GATCGTCACT CGTTCATTTA TTTCATCAGC AAAATACGGA ATCTTTTGCT
ATTTTGCCCA CAGCAGCTGA AATTGCATCA CAAACAGTGT CTAGCCGCAG TGGTTATCTC
GTTTTTGACG GGGCTCTCAT TTACTTTAGT AATACCACCA TTTTACCATC GACTGGTCAC
GGTGAAATTG CTGGCAGTTT AACGATGGTT CGCTTAGTGG ATAAAGCGTT AATTAACGAT
ATTAGTCAGT TTTCTTTGGT GAAGTTTTCA ATTGAGGATG CACAAACATC AACAAAAAAC
ATGCAAGAGT TTTTTAGTTT AAAGAAAATT GAAACTATTG CGCCATCACA CAATTGGCTA
ATCCGTAATA CGTTTGATGA CCAAGTGGTA CAGGTGACTT TACACCATAA AAAAGTGTCG
TTGCCTCAGT TAGATTGGGC ATCGGCAATA TCGATATTGT TGTCAATTGT GTTGATTGTT
TCTCTCTCGT TGATGGCATT ATCAAGACTG CTTATCAAGC CGCTTATTCG TTTTAACAAA
AGCATTAATG ATTCATCAGA TGATAATTTC ATCAGCAAAA TGGCTTCAAA TCATTTTATT
GATGAACTTG AAAATGTGTC TTACTCATTT AATCAATTAC TGCTTAAGTT TAATGCTCAA
CAAAATTACT TAGAGACATT AACGGTTCAA GATTCGCTCA CAGGCATAAC TAACCGTAGG
GGTCTTGAAG CATTTACAAA GCGAATTATT GCGCGCTGGC ATCTAGAAAA TGTTGGTTTT
AGTGTGATGA TGATTGATGT CGATAATTTT AAGTATTTTA ATGATAAACA AGGTCATCTT
AAGGGGGATG ATGCATTAAC TGCCGTTGCG ACCAGCCTGT TAGAGGTTAT GGCTCAATAT
GATGGGCTTG CTGCACGATA TGGTGGTGAG GAGTTCTGCA TAATTTTGGC CGATAATCAT
CATCAAAATA TATTGAACGT TGCGGAAGAG ATTCGTGAGT CTATCGAGAA ATTGCACATC
TCTAATAATA TTGATGATCG AGACTGGCTC ACGGTTAGTA TTGGTGTGGT GGTGGTTGAC
GATAAATTAG CCGACGTAGA AAAATATAAC TTTAGCGATG TATTACAACA TGCCGATGAG
CAACTTTATT TGGCTAAACA AGCGGGGCGT AATACTGTCA GAGTGGCGAA GTTTGGCGAC
TAA
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| Protein sequence | MTLKRFSLLL LSSLLLTITM LLVSIYYFFY LPGIKTEVLD QQQQEYNLLY SALSLSKNSL
TTLCYDYAVW DELVEYVGNP TDDFVQSNMP NNAFEAANID AVFVIDTNNK LIWDYQDDSL
KSSRSSLVHL FHQQNTESFA ILPTAAEIAS QTVSSRSGYL VFDGALIYFS NTTILPSTGH
GEIAGSLTMV RLVDKALIND ISQFSLVKFS IEDAQTSTKN MQEFFSLKKI ETIAPSHNWL
IRNTFDDQVV QVTLHHKKVS LPQLDWASAI SILLSIVLIV SLSLMALSRL LIKPLIRFNK
SINDSSDDNF ISKMASNHFI DELENVSYSF NQLLLKFNAQ QNYLETLTVQ DSLTGITNRR
GLEAFTKRII ARWHLENVGF SVMMIDVDNF KYFNDKQGHL KGDDALTAVA TSLLEVMAQY
DGLAARYGGE EFCIILADNH HQNILNVAEE IRESIEKLHI SNNIDDRDWL TVSIGVVVVD
DKLADVEKYN FSDVLQHADE QLYLAKQAGR NTVRVAKFGD
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