Gene Sfri_3937 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3937 
Symbol 
ID4280828 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp4697558 
End bp4698220 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content40% 
IMG OID638136758 
Producttranscriptional regulator, TetR family protein 
Protein accessionYP_752601 
Protein GI114565087 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.353211 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAACCC GCGATAAAAT CATTTTTGCC AGCTTAGAAC TATTCAATGA ACACGGTGAG 
CGTAGCATTA CCACCAACCA TATTGCAGCG CATTTAGGCA TTAGTCCGGG CAATTTGTAC 
TATCACTTCC GCAATAAAGA AGACATCATC AATTCAATTT TCAGTCTATA TGAAAGTCAT 
TTAGAGTCAG GCTTTAAGCC TTATGATGAT GTGCCTATTA CGATTGAATT ATTAATGGGT 
TATTTTGACG CCATGTTCTA TACCTTATGG CAGTTTAGGT TTATGTATGC CAACTTAGCC 
GATATTTTAA GCCGTGATGA TGCGCTAAAG AAACGCTACT TACATGCTCA ACAACAAGTA 
CTGACTCGCT CAAGCGATGT ACTGCGCAAA CTCAAAAAAG ACGGTTTCCT AGACGTCGAT 
GATAATAAAG TAACCGCGCT TGCCGACACC ATTAAAATGA TGGTCAGTTT CTGGATTAGC 
TACCAATTAA CTCAATCTAG TACATCAACC ATCACTAAAG CCACGCTATA CGATGGGTTA 
TTAAGAGTAT TGATGATTTT TCAGGCTTAC TCGACTCCCA CTTCAACCGC AACATTTTGT 
CGTTTAGAGC AACACTACTT AGACATAGCC AGCCAAGAAC GCCATAGCAT CGCACAAATA 
TAA
 
Protein sequence
MKTRDKIIFA SLELFNEHGE RSITTNHIAA HLGISPGNLY YHFRNKEDII NSIFSLYESH 
LESGFKPYDD VPITIELLMG YFDAMFYTLW QFRFMYANLA DILSRDDALK KRYLHAQQQV 
LTRSSDVLRK LKKDGFLDVD DNKVTALADT IKMMVSFWIS YQLTQSSTST ITKATLYDGL 
LRVLMIFQAY STPTSTATFC RLEQHYLDIA SQERHSIAQI