| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3887 |
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| Symbol | |
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| ID | 4280778 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4639521 |
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| End bp | 4642574 |
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| Gene Length | 3054 bp |
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| Protein Length | 1017 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638136708 |
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| Product | heavy metal efflux pump, CzcA family protein |
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| Protein accession | YP_752551 |
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| Protein GI | 114565037 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3696] Putative silver efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGACAT CGGTGATCCG ATTTTCGCTT ACTCAGCGTT TATTTGTGTT AATTGTGGCG
CTGTTTCTAA TGTTAGCCGG TGTTCGTTCT TGGTATTCCA TTCCATTAGA TGCCTTTCCT
GATATTTCGC CAACACAAGT GAAAATCATC TTAAAAGCGC CGGGGATGAC ACCTGAAGAA
ATCGAAGCGC AGATTACGGT GCCGATTGAA ACTGAGCTGT TAGGCATTCC CAATCAAGCG
ATTCTGCGCT CTACCACTAA ATATGCCATC AGCGACATCA CCTTAGACTT TGTTGAGGGC
ACCGACATCT ATTGGGCTCG TCAGCAAGTT AGCGAGCGCA TTTCTGCTGT GTGGGGGAGT
TTTCCTGAAG GGGTTACTGG TGGTGTAGCG CCGATGAGTA CACCGCTGAG TGAAATTTTT
ATGTTCACTT TGGAAAACCC TAATCTGTCA TTGATGGAAA GGCGACAGTT ATTAGAGTGG
GAAATTCGTC CTCTATTACG CACCGTTGTG GGCGTGGCAG ATGTCAATAT TTTAGGCGGT
TATGCCAAAA GCTTTAGCAT CAATCCAAAT CCTGCAGCTA TGTCTGCGGC GGGCATTAGT
TTTGCGGCTT TGCAACAGGC TATTGTCGAG AATAATCATA ATGAGGGTGC AGGTAAACTG
ACCATTGGTA CTGACACTAT TATCGTCCGC GCCGAAGGCC GTATCGACGA CATTGATGAG
TTACGACAGT TAGTGATAAA GGCTGATGAT GCCAAGGTTT ATCGTTTGAA TGATTTGGCT
GATATTCAGA TTGGTCACTT AGCCCGTTAT GGTGCCGTGA CTAAAGATGG TCACGAAACG
GCAGAAGGAT TAATCATCGC GTTAAAAGAT GCCAATACGG ATCAGGTGGT TAAAAATATT
AAACAAAAGA TTGAACAAAT CAGCCTGACT TTGCCAAAGG GCAGTCAAAT CAATACCTTT
TACGATCGGG CGAATTTGAT TAATACTGCA ATCGGGACCA TTTCTAATGC ACTATTTGAA
GCGGTGGTAT TAGTGATCGT GCTACTGGCA TTGTTTTTAG GCAATGTGCG TGCTGCGTTA
GTGGTTTCTC TTTCTTTGCC TCTCGCTGCC TTGATGACCT TTTTAATGAT GGATTTTTTC
AATTTATCTG CGAACTTGAT GAGTTTAGGC GGCTTAGTTA TCGCCATCGG TATGTTAGTG
GACTCCTCGG TGGTGGTGGT CGAAAATATG GTTAACCTTA TTGCGACCAA ACAACGATTG
CCACGACTTC ATCTCATTTT TCGAGCCACG AAAGATGTCG CCATTCCCGT GGTATCAGGT
ACAGCTATTG TGATGATCGT ATTTTCGCCA TTGCTGACCT TAACTGGGCT CGAAGGTAAG
CTTTTCACTC CCGTGGCGGT CACTATTGTA TTTGCGATGC TGTCCGCTCT GGTGTTATCA
CTGACTGTTA TTCCTGTAAT GGCGTCTTAT TTAGTCAATG AAAAGGCGGC CAAAGAACCA
AAAGCAATCG AAAAGCTCAA GCGGGTATAC CTTAGCAGCC TTAAAGCAAT ATTTGTTTAT
CAAAAACACT TTATTGTTAT CGCGTTAAGC TTGTTGATTG TTAGTTTTGG GCTGTTTAGT
TTTGTTGGTA AAACCTTCAT GCCGACGTTA GATGAAGGAG ACATTATTTT ACAGTTAGAG
AAGTCACCGT CGATTTCTCT GAATGCATCG ATTGCCATTG ATAAGCAAAT TGAACAAACT
CTGTTGGCAC AAGTACCTGA AATAAAACAA ATCGTGGCGC GTACTGGCGC CGATGAAATT
GGCTTAGACC CAATGGGGCT AAACGAAACC GATGTTTTTT TGGAGCTTAT CCCTCGTAGC
GAGTGGCGTT TTGCCAATAA ACAACAACTG ATAGAAGCGA TTAGAGCCGT ACTCGTGGAC
TATCCAGGGG TTAACTTTAA CTTTACTCAA CCCATTCAAA TGAGAGTATC CGAAATGCTG
ACAGGCAGCA TTGGTGATGT CGCGATAAAA GTCTTTGGTA ACGATATTGA GACGTTAGGC
AACTTGACCA GTCAAATTCA GCAGCTTGTG AATACCACTC AAGGGAGTGT CGACGTGAAA
ATGTCGATGA TTGAAGGTAG CTCCTTTATT AACCTCACCC TAGATAATGA AATAGCACGA
GGCTTTGGTA TGAGTACCAT GGAGTTTGCC CGTTATCTCA AGAGCCAACT CGAAGGCGTG
ATAGTGACCG AAGTGTTACA AGGCAAAAAA CGTACCCCAG TGCTGATTGC CAGTAACCCA
AGCAGCTTAA GCAGTATTAA TGAGCTGCAA AACCAATTAT TAGTGATGCC TGATCATAGC
CTTAAACGGG TTACTGATGT GGCCAAGCTA AGTTACAAAA AAGGTCCCAT TCTTATTGAG
CGTGAACAAG GCAATCGTTT CTCTGTTATT ACGACCAATG TTAATGGCCG TGACATTGTT
GGATTTGTTG AAGAACTGAA TGCAAAAATT ACTAATGAGG TTCAATTACC CAGTGGTTAT
AGCGTCAATT TTGGTGGTGA GTTTGAAAAT CAACAACGTG CTACTAACAA TCTGCTGCTG
GTTATTCCTA TTGCCATAGC GCTCATCACG TTGATTTTAT TTACTACGTT TGGCTCACTC
GCCAAAGCTG GGTTGATCCT CGCCAACGTG CCTTTTGCCA TGATGGGCGG TATCGTCAGT
TTATATCTGT CGGGTGAGTA TTTATCTGTA CCTGCATCAG TAGGTTTCAT CGCTCTGCTA
GGTGTTGCCG TGCTTAACGG TGTGGTGATG GTGAGCTATT ACGAGCAAAC TAAGCATATG
TTCAGTAGCC TTTTGGAAAG AATTGAACAA GGCGCCGTAC GTCGTTTACG ACCTATTTTA
ATGACGGCCA CCACGGCGAT GTTTGGCCTT ATGCCACTGG TGTTTGCCAC AGGCCCTGGC
GCTGAAATTC AAAAACCGTT AGCCATAGTG GTTATCGGTG GTTTACTTAC CTCAACGATT
ACCACGCTTT ACTTGCTGCC AATTTTGTAT TTCTGGCTGG AGAAACGTAA ATGA
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| Protein sequence | MLTSVIRFSL TQRLFVLIVA LFLMLAGVRS WYSIPLDAFP DISPTQVKII LKAPGMTPEE
IEAQITVPIE TELLGIPNQA ILRSTTKYAI SDITLDFVEG TDIYWARQQV SERISAVWGS
FPEGVTGGVA PMSTPLSEIF MFTLENPNLS LMERRQLLEW EIRPLLRTVV GVADVNILGG
YAKSFSINPN PAAMSAAGIS FAALQQAIVE NNHNEGAGKL TIGTDTIIVR AEGRIDDIDE
LRQLVIKADD AKVYRLNDLA DIQIGHLARY GAVTKDGHET AEGLIIALKD ANTDQVVKNI
KQKIEQISLT LPKGSQINTF YDRANLINTA IGTISNALFE AVVLVIVLLA LFLGNVRAAL
VVSLSLPLAA LMTFLMMDFF NLSANLMSLG GLVIAIGMLV DSSVVVVENM VNLIATKQRL
PRLHLIFRAT KDVAIPVVSG TAIVMIVFSP LLTLTGLEGK LFTPVAVTIV FAMLSALVLS
LTVIPVMASY LVNEKAAKEP KAIEKLKRVY LSSLKAIFVY QKHFIVIALS LLIVSFGLFS
FVGKTFMPTL DEGDIILQLE KSPSISLNAS IAIDKQIEQT LLAQVPEIKQ IVARTGADEI
GLDPMGLNET DVFLELIPRS EWRFANKQQL IEAIRAVLVD YPGVNFNFTQ PIQMRVSEML
TGSIGDVAIK VFGNDIETLG NLTSQIQQLV NTTQGSVDVK MSMIEGSSFI NLTLDNEIAR
GFGMSTMEFA RYLKSQLEGV IVTEVLQGKK RTPVLIASNP SSLSSINELQ NQLLVMPDHS
LKRVTDVAKL SYKKGPILIE REQGNRFSVI TTNVNGRDIV GFVEELNAKI TNEVQLPSGY
SVNFGGEFEN QQRATNNLLL VIPIAIALIT LILFTTFGSL AKAGLILANV PFAMMGGIVS
LYLSGEYLSV PASVGFIALL GVAVLNGVVM VSYYEQTKHM FSSLLERIEQ GAVRRLRPIL
MTATTAMFGL MPLVFATGPG AEIQKPLAIV VIGGLLTSTI TTLYLLPILY FWLEKRK
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