Gene Sfri_3756 details

Gene Information

• Locus tag: Sfri_3756
• ID: 4280649
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: -
• Start bp: 4462992
• End bp: 4464902
• Gene Length: 1911 bp
• Protein Length: 636 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 638136569
• Product: regulatory protein CsrD
• Protein accession: YP_752422
• Protein GI: 114564908
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2200] FOG: EAL domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAACTCA CCAAGATCCT TACTAAAAAA CTGACCAGCT TTTGGCTGCT TTCATTAGCT 
GCGGTGGCAT TTGTATTTTT ACTGTGTGCG GTGATGGGTT TTACTCAATT GACCTACAAT 
TTCCAACAGC AGAAAGTGGC TGAGTTAGAA ACCATGTTAG CTGACGACTA TCAACAACAT 
GGCAGTAGTC AATTTTCTAC TTGGTTACCT CCTTTATTGA CAGCTTATAA AGCGGTTGAA 
TTCTCCCTGT CGCAAGACAA CCAATTAGTT TATCAATTTC ATCGTGACCA AGCCGATATC 
GTTAAAAGCA GTTTAACGCT CTATAAGACC GAATTAAGCC ATGGAAAATT ATCTATGACG 
TTAATTATGC CACCGCCATT TTCTCTACAT GATCTCGGCT GGCACGAGCT CATTATTCTT 
GTTATTGGTT TTATCAGCAT AGGAATTTTT GTGCGTTTTG GTTATGGCTG GTACTCCAGA 
GAGTTAGATG GAATTGAACA ACTTGCTCAA CGAAGTAAAC TCATTTTAGA GGGACATTTA 
AAGCAAGCAG CCGATATGCC GACAAATGGT AAACCACGGA TGATCAATCG TGCTATCAGT 
AAATTGCTTG CAGAGTTGGA TGATGCTCAT AAAGAACGTG GTCGCTTAGA TCAATTTATT 
CGTAAAGATA CTTTTCTTGA TAAACAAACT CAGATTGGTA ACCCGATATT CTTTCAAAAT 
CGTCTCGATG GATTAAGCCA TAATCAAAAA ATGGTAGCTC ATGGCGTATT GATGTTAATT 
GAATTTGATG ATGTTGACTT AGTGGAAGAC CAATACGGTG AAAGCGGCGT TAAGGCAATG 
CTGTCATTAA CAACGGAAGC CATTACAGCC GCACTCGTTC AATACGAAGA CAGTATTTTT 
GCCCGCCGCA GTTACTCACA ATTAGTCATT ATCGTGCCAC AATTGTCACT AGTAGAAGCC 
GACCAACTAG CGCAACGAAT ACTCAAAACC TGCCTTGCAT TACCTTTTTA TGGCATTGGC 
AATCCGGATA ATTTTTTACA TTTAGGCAGT GCTTTTTTTA ACGCTGGAGA TTTACAAGTT 
CAGCTTATTG AAGAGGCCGA AATGGCACTT CGAGCTGCGC AACTGCAACG TGTTAATAAC 
TGGTTTATGT ACGATAAAGG CGCGTTAGAT GAGGAAATCG CTAAAGGGTC TGTTCGTTGG 
CGTAGTTTTA TTGAAAATGC ATTGGTGTCC AAACGCTTTT TTACCTTACA ACAAGCCATT 
ATCGATAGTG ATAATCAAAT TATGCACTAT GAAATATTTA GCCGCGCTCG TGATTTAAAA 
GGTAATGATG TTCGCGCTAC ATTGTTTATT CCCATGGCTA ACAAGTGTGG GTTAATGCCG 
CAGGTTGAGA GGCAAGTACT GGAACAAGTA CTCTTTAGGT TAATGTCCGA TAATGAGTCT 
ATTTACAGTA TTAACTTAAG CCTTGATAGT TTAACCAGTA GGGCATTTGT ACGTTGGGTA 
CAATCTACCT TATTAGAGCA TCGCCCTTTA GCCGCACGAC TTATTTTTGA AGTTTCTGAA 
GACATTATTG TCAAAAATCA GAAAAATACT TTGTTAGTTA AAACTCTCGA TATGTTGAGA 
AAAATGGGCG CAAAATTGGC AGTAGATAAC GTTGGTCAAT CTGTTGTGGG TACTCACTAT 
ATCCAGGAGT ATCACTTTGA TTTAGTAAAA CTACATCGCT CTATCGTGCG CCGGGTAGAT 
CAACGTTCAG AAAATCAATT ATTTATACGA AGTCTCATTG GTGGCCTTTA TAGAGCCGAA 
GTGAAAGTGA TTGCCGAGGG CGTTGAATGT TTTGAAGAAT GGCAAACGTT AAAAATTCTT 
GGTGTGAGTG CAGCCCAAGG CGATTTTTTG GGGCAAAGAT CTGAAGTTTA A 

 

Protein sequence

MKLTKILTKK LTSFWLLSLA AVAFVFLLCA VMGFTQLTYN FQQQKVAELE TMLADDYQQH 
GSSQFSTWLP PLLTAYKAVE FSLSQDNQLV YQFHRDQADI VKSSLTLYKT ELSHGKLSMT 
LIMPPPFSLH DLGWHELIIL VIGFISIGIF VRFGYGWYSR ELDGIEQLAQ RSKLILEGHL 
KQAADMPTNG KPRMINRAIS KLLAELDDAH KERGRLDQFI RKDTFLDKQT QIGNPIFFQN 
RLDGLSHNQK MVAHGVLMLI EFDDVDLVED QYGESGVKAM LSLTTEAITA ALVQYEDSIF 
ARRSYSQLVI IVPQLSLVEA DQLAQRILKT CLALPFYGIG NPDNFLHLGS AFFNAGDLQV 
QLIEEAEMAL RAAQLQRVNN WFMYDKGALD EEIAKGSVRW RSFIENALVS KRFFTLQQAI 
IDSDNQIMHY EIFSRARDLK GNDVRATLFI PMANKCGLMP QVERQVLEQV LFRLMSDNES 
IYSINLSLDS LTSRAFVRWV QSTLLEHRPL AARLIFEVSE DIIVKNQKNT LLVKTLDMLR 
KMGAKLAVDN VGQSVVGTHY IQEYHFDLVK LHRSIVRRVD QRSENQLFIR SLIGGLYRAE 
VKVIAEGVEC FEEWQTLKIL GVSAAQGDFL GQRSEV