Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3648 |
Symbol | |
ID | 4280541 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 4326972 |
End bp | 4327973 |
Gene Length | 1002 bp |
Protein Length | 333 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638136461 |
Product | transcriptional regulator, AraC family protein |
Protein accession | YP_752314 |
Protein GI | 114564800 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACATTTC GCAGCATTAC CAGTGTGCAA ATTATTGTGT CCTATGGCAT TGAGCAGGGC ATTGAGCAAG AGCGGTTGCT GCAAGGGTCT GGTTTGGTGG GCGCCCAATT AACCGATCAC GAGCAATTGG TTGAAGAAAA ACAAGAATTA CAGGTGTTAA ATAACCTCAT GCTCAATACT TCATGCCCAT TCAAGGTTGG AATGGAGTTA GGTTGCCGTT ATCACCTGAC CAGTTATGGC ATCATGGGTT ATGCTCTATT GGCGAGCAGC ACTGCGAGAA AGGCGATTGA ATTAGGCTTA CGTTATCTAG ATTTAACCTA TGTTTTTTCA CAGATAACAT TAACTGAGCT TAAGGACGAT TTATCCCTAA GGTTCTCATG CGACATTCCT GGTGAGTTAG GTGAACTGGT GTTAGTTAGA GACATGTTGG GCGCTGCGAT GATCCAACGA GAAGTATTTG AAAGTAACGA CTTACCGATA AAATTGCAGT TTACGTCGCC TCAGCCCGCA GGCTTGTCAC TCGAAGGTAT AAAGCAAAAA CTGGGTGCTG AGATCCAATT CAATGCTAGT TATAACGGTT TTACTGGATT AACACCGCTA TTAGATCTGC CATTATTAAA AGCCAATGAA GCCACCGCCA GATTATGTGA GGCGCAATGC AACCAGCTAC TGCAACAAAA GCAAAACTGG AACCCTGTTG CTAAGTTGGT CAAAGACACC TTAGTACACT TAGGCTTAGC AGCATCAATG GAAGATATCG CCCAGCATTT GGCTCGAACG ACTCGCACTT TGCATCGTCA ACTAACACTA GAACAAACCA GTTGGCGCCA GGTGCGTGAC GATGTGCGTT TTGGCATAGC CGAAGTGTTA TTATTAACGC CGATGCAACT TGATGAAATA GCCGAACGCC TTGGTTTTAG TGATGGGGCC AATTTTAGCC ACAGCTTTAA GCGCTGCAAA AATATAACCC CAAGCCAGTA TCGAAAGCAG GCGAAAAAAT AG
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Protein sequence | MTFRSITSVQ IIVSYGIEQG IEQERLLQGS GLVGAQLTDH EQLVEEKQEL QVLNNLMLNT SCPFKVGMEL GCRYHLTSYG IMGYALLASS TARKAIELGL RYLDLTYVFS QITLTELKDD LSLRFSCDIP GELGELVLVR DMLGAAMIQR EVFESNDLPI KLQFTSPQPA GLSLEGIKQK LGAEIQFNAS YNGFTGLTPL LDLPLLKANE ATARLCEAQC NQLLQQKQNW NPVAKLVKDT LVHLGLAASM EDIAQHLART TRTLHRQLTL EQTSWRQVRD DVRFGIAEVL LLTPMQLDEI AERLGFSDGA NFSHSFKRCK NITPSQYRKQ AKK
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