Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3551 |
Symbol | |
ID | 4280444 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 4220330 |
End bp | 4221499 |
Gene Length | 1170 bp |
Protein Length | 389 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638136363 |
Product | O-succinylhomoserine (thiol)-lyase |
Protein accession | YP_752217 |
Protein GI | 114564703 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
TIGRFAM ID | [TIGR02080] O-succinylhomoserine (thiol)-lyase |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTAAGC ATCAAAGCGC CACATTGGCC GTTCGCCAAG GTATTGAAAC AGACACACAA CATGGTGCTA TCGTGCCACC GATTTATTTA TCGACCAATT ATTCATTCGA TGGCCACAAT AATCCGCGCG AGTTTGATTA CAGTCGCTCG GGTAACCCTA CTCGATGTAT TTTAGGCGAC GCACTCGCCA AACTTGAACA AGGTGCAACC GGTGTAGTGA CATGTACCGG CATGGCCGCG ATTACATTGG TGACTAGCTT ACTTGGTCCT GATGATTTAT TGGTTGTGCC GCACGATTGT TATGGTGGCA GTTACCGCTT ATTCACTAAC TTGGCCAAAA AAGGCCAATT TAAGTTATTG GTCGTTGATC AAACTGACGC ACAAGCGCTG AGCAAAGCAA TAGCTCAAAA ACCGAAAATG GTGTGGTTAG AAACGCCATC GAATCCTTTA TTGCGCGTGG TCGACATTGC TGCCATTAGC CAAGCTTGCC ATGACGTTGG CGCGTTAGTA ACAGTCGATA ACACCTTTTT ATCGCCGATA TTACAGCAGC CATTGTTATT GGGTGCAGAC ATTGTTATTC ACTCAACCAC CAAATACATC AATGGTCATA GCGATGTGGT CGGTGGGGCT GTAGTCGCTA AAGATCCTGA AGTGGGTGAG TTGTTACATT GGTGGTCAAA TACTCTTGGG CTTACGGGTT CAGCATTTGA CAGTTATTTA ACCTTGCGAG GCTTACGTAC TTTAGCGGTA CGAATTCGTG AGCATCAACG TAACGCACAA AAGATTGTTG AGTTACTCAA CGCCAGTGAT GTAGTGGCAA AGGTGTATTA TCCGGGTTTA AAAGACCATC CAGGTCACGA AATTGCGGCA AAACAACAAC AAGGCTTTGG TGCTATGTTA AGTTTTGAGT TAATCGGCGG CGAAGCGGAA GTGGTGGCAT TTTTAAAGGC GCTGTCGTTG TTTAGTGTTG CCGAAAGTTT AGGCGGGGTG GAAAGTTTAG TCGCCGTTCC GGCCACTATG ACCCATAGAG CAATGGACCC ACAAGCAAGG CAAGAGGCTG GTATTAAAGA GACTTTATTG AGACTATCTG TCGGTATTGA AGATGCAGAT GACCTCTTGA CCGATATTCA AGCAGGCCTA GCAGCTGTTG CAGCGATAAA ATCAGCTTAA
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Protein sequence | MTKHQSATLA VRQGIETDTQ HGAIVPPIYL STNYSFDGHN NPREFDYSRS GNPTRCILGD ALAKLEQGAT GVVTCTGMAA ITLVTSLLGP DDLLVVPHDC YGGSYRLFTN LAKKGQFKLL VVDQTDAQAL SKAIAQKPKM VWLETPSNPL LRVVDIAAIS QACHDVGALV TVDNTFLSPI LQQPLLLGAD IVIHSTTKYI NGHSDVVGGA VVAKDPEVGE LLHWWSNTLG LTGSAFDSYL TLRGLRTLAV RIREHQRNAQ KIVELLNASD VVAKVYYPGL KDHPGHEIAA KQQQGFGAML SFELIGGEAE VVAFLKALSL FSVAESLGGV ESLVAVPATM THRAMDPQAR QEAGIKETLL RLSVGIEDAD DLLTDIQAGL AAVAAIKSA
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