| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3321 |
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| Symbol | |
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| ID | 4280223 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 3967252 |
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| End bp | 3970488 |
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| Gene Length | 3237 bp |
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| Protein Length | 1078 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638136142 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_751996 |
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| Protein GI | 114564482 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3264] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.660513 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCATAC TCCAACCTGA GCAAAGTATT ATGTTACGTT TAGCGTGTTT ATTCTTGTGT
TTCCTTATAG TTAATACACT GTCGGTTTCT GTATTTGCCA ATACTCCCCT AACCCTAGAT
AAGCGCTTGG GGCTCAATAG CCAAGCCGAA AATCAGCCGC TTGATATCAC ATCTCAAATT
GCAGAACTGC AAAGCAGCAT TGAAAAGCTG CAAATAGAAC AGCAAACCTA TACCAATATT
GAACAATCTA ACAACGAAAC CAAACTATCA CTAGCAGGGC AATTACGCGA AGCGCAAATA
GCATTGACTC TAGATGCGGA TATCGATCTT GATCAGCAAG CCTCAATGGC CTATTTTCAC
TTATCGGAAT TAAAAGAGAC TGAGTCCAGC CTTAATGATA AGTTGCGCCT AATTTCGCAA
CGTCAGACAC TATTACCAGA CTTAATAGTT CAGGCACAAA ATGCCTTAAC TCAGCATAAT
AAAACCCTCC AAGTCCCAAT TGAGACTCCG TTAGGCCAAC GTAACAAACT TCAAGCAGAA
CTGCTAACGC AGCATATTGC GACCTTGCAG TCGGAACGTT TAGCTAATCC TAAGCAATTA
GAGATTACCC AACTACAACA ACAGCTCAAT CGCTTATCAT TAAGCCAACA AGAAACCTTT
ATCGAGCTTA TCAACAAACA TAATATTGAG TATCGTCAGC AGCAAACCGC AGACACCATA
GCCAACAACT TAATTGATGC TCAAGAACTG GCCGATCCAT TATCTCAAGA TTTAAGTAAG
TTAAATCAGC ACTATGCAGA GCAATTACAA AAACTTACTA GCAATATAAA ATCTGCGATA
GAGAAACAAC AACGCATTGA AAAACGCTAT CAATCTCAAA ATGCACAGCT ATCAAACGTG
CTTGAGCAAA TTACCTGGGT TAAAACCAAT TCTGCATTCG GCGATCGTTT CTTACAAATG
CTGCAATCAT TGCCTAAACC GCCCAATCTC GACAAATTGC AAACAGAGTT AGCTGACACA
CGGCTAGAGC GCTACCAATT AGAACAACAA CAAGCGCTAA ATAGTCAGCA ACTCGATGAC
AGCGAAATGT TTAATGAAAC CCAAGTCAAA TTATTGCAAT CACAGCAAGT ACTGATAGAG
CAGCTATTGC AAAGCTACGA TCGATACCTG GCTGAATTTG CAAAATTGCG TATTGGTTAT
GAACAGTTAA ATCAACTGCA CAACACATTA AAAAATACTC TTAATGAGCA TTTGTTTTGG
GTACCTAACG CCCCTAGCAT TGGCGCATTA TGGCTAATTG ATTTGAGCCA CAGTAGCGTT
TGGTTGCTGC AGCCAAGTCA GTGGCAGTCA TTACAGCAAG CGTGGTCCGA ACAGAGTAAT
TATTGGGCTT GGTGGGGTAT TTTATTATTG TGCTGTTTAA TGGCACAAGA CATGCTGACA
CCTAAGTTCA ATAAAGCGAT TGGACGCTAT GCAATTTTTG TCGGTAATGT GACTCAAGAT
AAATTCAAAT ACACCATAAA AACCCTAATC ATCAGCTTAG TGTATGCCCT AATAAAACCC
TTACCAGTGA TCATGGCTGG GTTTATATTC TCGCGATCAG AGCAAAATAT GGTGTATGCC
GTTGGAGTGG GCATCTTAGC CATTGGTGTC TGTTATCTCA TTTACCAATT CTTTTACTTA
TTAACCGTTG ATAAAGGCAT TTTGATCAGC CACTTCAGAC GGCCCAAGAA AATTGTAAAA
CAAGCACAAC AAACCATGGC TTCATTTGTC ATGGTTTCGG CACCATTAAT CGGTTTAATG
GGCTTTACCG AAGCATTAGA TACTTCGTTA GTACGCAACA GTCTTGGCCG CGGTGCATTT
ATCGTTTTCT GTATTGTATT ATGCCTGCTG TATAAAGATA TCATGTTACT TATTGGCCAA
TATCGTAAAA ATAAGCCTAA CGCCACTAAC ATGGAGTTGA TTCAAAAAGC GGTATGGGCA
CTTCTAGTTG TCACGCCAAT ATTTAGCGCT ATCTTGGCGG GAATAGGTTA CTACTTCACG
GCTTTCCAGC TGCTATTACA GCTACAAATA TCGGTACTGT TAGGCTTAGG TTTCTTACTA
ACCTATCAGC TCATTAAGCG TTGGATGTTA ATCGAGCGTC GCCTAATTGC TTTTGACCGA
GCCAAAGCAA AACGTGCAGA GCGACTTGCA CAGCGTGAAA GAGGCGAAAT GAATAATGAG
CCGATAGAAA CCTACGAAGA ACCCGTCGTT GATTTAGAAA CCATCTCTAG CCAATCGTTA
GGTTTAGTCA GGTCGATCTT AATTTTAGCT TTTTTTGCCA GCTTATTAGG CATTTTGGCG
CAAACACATA CTGCGGTATT CTCATTTTTA GATGGCATCA CCTTATGGAC CACCAATAGC
AATGTAAATG GTATTGAGCA GCAAGTGCCC ATTACATTGA AGTCTATTTT ATTTGGCATC
ATGTTGGTCG GGTTCTCGGT CGTTATTGCG AAGAATCTAC CTGGTTTACT TGAATTAATG
CTTCTACAAA GGCTCGATTT ATCGCCAGGC ACAGGTTTTG CTATTACCAC TGTGAGTAGC
TACCTTGTGG TATTTTTTGG CATGCTGTTC GGGTTTTCAA CTTTGGGCAT GGAATGGTCA
AAATTACAGT GGTTAGTTGC CGCATTATCA GTGGGCTTAG GTTTTGGTCT CCAGGAGATT
TTTGCCAACT TTATTTCCGG TATTATCATT CTATTTGAAA AACCGATCCG TATTGGTGAC
ACGGTGACGA TCCGCGATCT CACCGGTACC GTCAGTAAAA TTCAGATTAG AGCAACCACG
ATTGTCGATT GGGATCGTAA AGAAATTATC GTGCCTAACA AAGCCTTTAT CACCGAACAA
TTGGTTAACT GGTCTTTATC AGATCCTATT ACCCGCGTTA TCGTTACGGT ATCGGTGTCT
CGTGATTCAG ATCCAGCGAA AGTCGAAATG TTATTGCATC AAGCGGTACG TGAATGTGAC
TTATCATTAA CCAGCCCAGA ACCCGAAGTA TGGTTTGCGG GTTTTGGTCA ACACACACAA
GATTATGAAG TACGCTCGTA TGCAAAAGAC ATGTCTGATC GTTGGCCACT ACGCCATAAT
TTACATAAGC GTATTAGTAA AAAATTAAAA GACAACAATG TTGAACTTGC CTACCCTCAG
ATGGAAGTTC ATATTAATCA TGCACCTAAA GAATCCACCG GATTATACAA GGGCTAA
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| Protein sequence | MAILQPEQSI MLRLACLFLC FLIVNTLSVS VFANTPLTLD KRLGLNSQAE NQPLDITSQI
AELQSSIEKL QIEQQTYTNI EQSNNETKLS LAGQLREAQI ALTLDADIDL DQQASMAYFH
LSELKETESS LNDKLRLISQ RQTLLPDLIV QAQNALTQHN KTLQVPIETP LGQRNKLQAE
LLTQHIATLQ SERLANPKQL EITQLQQQLN RLSLSQQETF IELINKHNIE YRQQQTADTI
ANNLIDAQEL ADPLSQDLSK LNQHYAEQLQ KLTSNIKSAI EKQQRIEKRY QSQNAQLSNV
LEQITWVKTN SAFGDRFLQM LQSLPKPPNL DKLQTELADT RLERYQLEQQ QALNSQQLDD
SEMFNETQVK LLQSQQVLIE QLLQSYDRYL AEFAKLRIGY EQLNQLHNTL KNTLNEHLFW
VPNAPSIGAL WLIDLSHSSV WLLQPSQWQS LQQAWSEQSN YWAWWGILLL CCLMAQDMLT
PKFNKAIGRY AIFVGNVTQD KFKYTIKTLI ISLVYALIKP LPVIMAGFIF SRSEQNMVYA
VGVGILAIGV CYLIYQFFYL LTVDKGILIS HFRRPKKIVK QAQQTMASFV MVSAPLIGLM
GFTEALDTSL VRNSLGRGAF IVFCIVLCLL YKDIMLLIGQ YRKNKPNATN MELIQKAVWA
LLVVTPIFSA ILAGIGYYFT AFQLLLQLQI SVLLGLGFLL TYQLIKRWML IERRLIAFDR
AKAKRAERLA QRERGEMNNE PIETYEEPVV DLETISSQSL GLVRSILILA FFASLLGILA
QTHTAVFSFL DGITLWTTNS NVNGIEQQVP ITLKSILFGI MLVGFSVVIA KNLPGLLELM
LLQRLDLSPG TGFAITTVSS YLVVFFGMLF GFSTLGMEWS KLQWLVAALS VGLGFGLQEI
FANFISGIII LFEKPIRIGD TVTIRDLTGT VSKIQIRATT IVDWDRKEII VPNKAFITEQ
LVNWSLSDPI TRVIVTVSVS RDSDPAKVEM LLHQAVRECD LSLTSPEPEV WFAGFGQHTQ
DYEVRSYAKD MSDRWPLRHN LHKRISKKLK DNNVELAYPQ MEVHINHAPK ESTGLYKG
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