Gene Sfri_3273 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3273 
Symbol 
ID4280175 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp3918420 
End bp3919040 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content37% 
IMG OID638136091 
Productputative 2'-5' RNA ligase 
Protein accessionYP_751948 
Protein GI114564434 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1514] 2'-5' RNA ligase 
TIGRFAM ID[TIGR02258] 2'-5' RNA ligase 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.543044 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTTTTAA AATTAGTAGC ATTGTTAATC TATCAACGTT TATGTTTCAG CTCAATAAAT 
AATAGGGCCA ACCAGATGCA AACACCTTCG TCAGCAAGAT TATTTGTCGG CTTTAGCTTA 
GACAAACCAC AAATAGATAA AATATTACAT CTACAACAAA CACTTATAAC TAAAATAAAT 
ACAAATTCAG TAGCCACTTT AGCACACAAC TTACACATAA CATTAGGCTT TTTCGGTCAA 
ATAGATCCGA CCACTTGTTC AAAAATCCGC GAAGCAATAA ATCAGATGCC TAAAACAACT 
TTCAGCCAAA TTATCGACAC CTTTGCTTGG TGGCAAACAG CACAATTAAT CTGTTTAAAA 
GGACAGGCGA GTGCATCATT AAACACTATG GCGAATGACA TTAAGAACAT TGCAAAAACT 
CATCATCTTG CCGTCAGTCA ATACGATTAT GTTCCGCACA TTAGTCTATT TCGTGGGGTG 
ACAACAGCTT CTTTACCAAC CGAGGTAAAG GACACTCAGC TCATTATCGC ACCAAGCCAT 
TTGCACTTAT ATCAATCGAC TGGCCGCCAC AATAACGTTA ACTACACGAT AGTAGAAAGT 
TGGCCATTAC TGCAAAAATA A
 
Protein sequence
MFLKLVALLI YQRLCFSSIN NRANQMQTPS SARLFVGFSL DKPQIDKILH LQQTLITKIN 
TNSVATLAHN LHITLGFFGQ IDPTTCSKIR EAINQMPKTT FSQIIDTFAW WQTAQLICLK 
GQASASLNTM ANDIKNIAKT HHLAVSQYDY VPHISLFRGV TTASLPTEVK DTQLIIAPSH 
LHLYQSTGRH NNVNYTIVES WPLLQK