Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3242 |
Symbol | |
ID | 4280144 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 3878647 |
End bp | 3880017 |
Gene Length | 1371 bp |
Protein Length | 456 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638136060 |
Product | TPR repeat-containing protein |
Protein accession | YP_751917 |
Protein GI | 114564403 |
COG category | [S] Function unknown |
COG ID | [COG3014] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0125577 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTAAGAA CATTCTGTAT TGGGTTGACT CTCAGTCTTG GCCTATCTGG TTGTGCCTTT AATAGTGTGT TTGTTAACTA TCCATCGCAA ATAGCGCCAT ACAAGCAACA ACTCAATAGC GATTCACCAA CAGCAAAAAT CACTGATTTG GCCGACAATA TTAGCGGCAA TGATGGCTTA CTTTACGCCC AAGAATCTGG GCGTATTATG CAGATTGCGG GTGACTTTAC TGGCAGTAAA ACCTATTACC AGCAAGCCAT TGACGATTAC CAGATTTTCG ATGATAAAGC CATCGTGAGT GCGAGTAAGT TAGGCGCTGG GGCAAGCAGT ATTTTACTCA ACGATAATGC CATTCCTTAC CGAGGCCCAG GTTATGAGCG CATTATGTTG CATCAATATC AGGCGTTTAA TTATTTATTT AGTGGTGATG CTCAAGGGGC ATTAGTAGAA GTTCGCCGCA GTAATGAACT GCAAAGCATG GAACAAGCAC GCTATCAGAA ATCACAAAAG TCAGTGCAAG ACATGGCCAA TGGCACCATT GACGCGCAAG TAGCCCAATT AAGCAAAGAA GCCGGCAATG TCACCAGTTC ATTTCTAAAC GCTTACAGCT ATTACACTAC TGGTTTGTTG CACGAACTCG CCAGCGAGCC TAATGATGCG TTTATTGATT ACCGAAAAGC AGCACAAATT ACCCCAGACA ATGTGTATTT ACAGCAAGAT TTAGTCCGTT TAGCTAAACA ACTGGGGATG CCTCAATACG ACGAGTTTAA ACGTCGCTGG GGAGAGGCGG TAATGCCTAC ACCCGATCAA GGCCAAGTTG TATTTATTAT TGAACGTGAT TTTGTACCAG AAAAACAGAG TATTACGGTA CCTTTTCCAC TTAACGGTAA TATTCAATCA GCATCATTAG CGACCTATCA GCCACAACGT CTGTTAATGA ATAACAGCCA AATCCAAGGA TTAGGCACGC CACTAACAGC ACAAACCATT GCTAACATTG ACGCGCTAGC AATTAATGCA TTAAAAGAAG ATTTACCCGC TGCGCTGTTT AGACAAGCAG CAAGAATTTA TGCTAAATAC CAAATGAATC GCAGTGTACA AAGCAGCAGC CAACGAGCCA ACAATCAAGT AGATGCTGCT GCGATGGTAA TGCAAATATT TAATGTTATC ACCGAGCAAG CCGACCGTAG AAGTTGGTTA ACCCTGCCTC GCCAGGCTCA AATTGCTCGA CAATTTATCG ATGCCGGCAG CTATAATGTT CGCTTAAATA GCAGCCAAAA TGTAAATATT GACGTAAAAC CAAACCGTAC AACATTAATT TGGGCAATAG AGACTGGAAA TCGTACCCGT TTTTATTCGA TAATCATCTG A
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Protein sequence | MLRTFCIGLT LSLGLSGCAF NSVFVNYPSQ IAPYKQQLNS DSPTAKITDL ADNISGNDGL LYAQESGRIM QIAGDFTGSK TYYQQAIDDY QIFDDKAIVS ASKLGAGASS ILLNDNAIPY RGPGYERIML HQYQAFNYLF SGDAQGALVE VRRSNELQSM EQARYQKSQK SVQDMANGTI DAQVAQLSKE AGNVTSSFLN AYSYYTTGLL HELASEPNDA FIDYRKAAQI TPDNVYLQQD LVRLAKQLGM PQYDEFKRRW GEAVMPTPDQ GQVVFIIERD FVPEKQSITV PFPLNGNIQS ASLATYQPQR LLMNNSQIQG LGTPLTAQTI ANIDALAINA LKEDLPAALF RQAARIYAKY QMNRSVQSSS QRANNQVDAA AMVMQIFNVI TEQADRRSWL TLPRQAQIAR QFIDAGSYNV RLNSSQNVNI DVKPNRTTLI WAIETGNRTR FYSIII
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