| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3185 |
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| Symbol | |
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| ID | 4280087 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 3812904 |
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| End bp | 3814628 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638136003 |
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| Product | TrkA domain-containing protein |
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| Protein accession | YP_751860 |
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| Protein GI | 114564346 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0471] Di- and tricarboxylate transporters |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGAAA TATGGTTGTT AGCGATTATC TTGTTAGCAC TGGTCGGTGG ACTTCTTGCT
GGGCTTGCAA CACCGGCCGC CATGTTTTTC TTCGCTTCAT TACTTTGTTA TATCCTCGGG
CTAGTTGATT TAAATGTAGC CCTTGGCAGC TTTACTAATA ACGGACTAAT CACTTTGGTG
CTGTTGGTGC TGGCTGCCAC AGCTCTCGAG AAAACCTCAT TACTGGGCAA ATTAAGCCAA
GTGATAGGGA AAGGCTCGTT ATTTTCTACC CTGGCTAAGT TAGGTATATC GACGGCGTTG
TTGTCGTCGT TTACCAATAA TACAGCTGTT GTAGCATCGT TAATTGGCGT TGTGCGTCGT
AATCAAGCGC ATGCTCCTTC TAAGTTATTG TTGCCATTAA ACTATGCTGC AATCCTCGGT
GGTACGCTTA CGCTCATTGG TACTTCTACC AATTTGATTG TTAACTCATT TGTTGAAAAT
GCTGGCCTTG AACCTCTGGG ATTTTTTGAG TTTTCACAAG TTGGCGCATT AGTTGTCATA
AGTGGTTTAG TCGTGTTGAC CATAATGGCT AACTTTTTAC CCGATAGACG TGAAGAGTCC
GAAGATGAAG CATTGCCTTA TCTATTGGAA GCCCATGTTG CTAAAACCTC TACTTTAGTG
GGTAAAAGTG TCATTGATAA CCGTTTGCGC GCACTTAAAA AACTCTACTT AGTTGAATTA
GAACGCAGCG GTATACGTAT TTGCCCTGTG CCACCACAAA TGGTGCTGCA AGCCGATGAC
GTTTTGCGTT TTAGTGGCGC GGTTGAGTCG GTTGAGCTAT TGCATCAGTT TGATGGTTTA
GAGTGGTTTG GTAAGCAGCA TGCTAAAGGC CAAAATTTGG TTGAAGCGGT TTTAGCGCCA
TCATCAAGTT TAGTTGGTAC AACCTTAAAA GATTCGCGTT TTCGTGAAGT CTTTGATGCA
GCCGTAATGG CTATTCGTCG TGGTCATATT CCGTTAAAAG GCGGACTAGG CGATGTGGTG
CTACAACCCG GTGATGTGTT ACTGCTCACG CCTGGCGATC GTTTTTCTAA GAGCCCTAAT
TTAACCAGCG ACTTTGCTGC AGTTAGCGGC TTAGATTTAA GCGTTCGTTT AGATGAAAAA
CGCGGTAACT GGGTGCTTGT TGGATTTGCA TTAACCATTT TGGCCAGCAT TTTTGATGTA
TTACCTTTAG CCAAAGGCTT AGTTTTATTA TTACTCAGCT ACGTGGCGAT TGGCGCGATA
ACCTTAAGTG AGCTTAAACG TCGCTTCCCG TTAGAACTGG TGGTGATTGT AGGCAGTGCC
TTAGGCTTAG CTAACTTAAT GGTCACAACC GGCCTAGCAG ACGTCATGGC GCAAACTTTA
TTGAGTGTGT TTAATGGCTA TGGTGTGTTT GCCGCCTTTG TTGGGATTTA TCTGATTACG
TTAATTGTCA CCGAGTTGAT AACTAACAAC GCTGCTGCAG CACTGGCGTT CCCGGTGGCT
TATGCGGTCG CGACCAGTTT TGGTGTCGAT CCTCGGCCGT TTATTATGGC GGTGGTATTT
GGTGCAAGCG CGAGTTTTAT TTCGCCTTAC GGCTATCAAA CTAATCTCAT GGTATTTAAT
GCCGGTAATT ATAAATTCAG CGATTTTGTG CGCTTAGGTT TACCGTTATC CATCGTATAT
TCATTAGTGG TTATTTTTTC GATCCCGTAT TTCTTCCCGT TTTAA
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| Protein sequence | MSEIWLLAII LLALVGGLLA GLATPAAMFF FASLLCYILG LVDLNVALGS FTNNGLITLV
LLVLAATALE KTSLLGKLSQ VIGKGSLFST LAKLGISTAL LSSFTNNTAV VASLIGVVRR
NQAHAPSKLL LPLNYAAILG GTLTLIGTST NLIVNSFVEN AGLEPLGFFE FSQVGALVVI
SGLVVLTIMA NFLPDRREES EDEALPYLLE AHVAKTSTLV GKSVIDNRLR ALKKLYLVEL
ERSGIRICPV PPQMVLQADD VLRFSGAVES VELLHQFDGL EWFGKQHAKG QNLVEAVLAP
SSSLVGTTLK DSRFREVFDA AVMAIRRGHI PLKGGLGDVV LQPGDVLLLT PGDRFSKSPN
LTSDFAAVSG LDLSVRLDEK RGNWVLVGFA LTILASIFDV LPLAKGLVLL LLSYVAIGAI
TLSELKRRFP LELVVIVGSA LGLANLMVTT GLADVMAQTL LSVFNGYGVF AAFVGIYLIT
LIVTELITNN AAAALAFPVA YAVATSFGVD PRPFIMAVVF GASASFISPY GYQTNLMVFN
AGNYKFSDFV RLGLPLSIVY SLVVIFSIPY FFPF
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