Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3076 |
Symbol | |
ID | 4279979 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 3682217 |
End bp | 3684517 |
Gene Length | 2301 bp |
Protein Length | 766 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 638135895 |
Product | organic solvent tolerance protein |
Protein accession | YP_751752 |
Protein GI | 114564238 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1452] Organic solvent tolerance protein OstA |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGATCC GTTATTTTCT GGCACTAAGC CTACTCCCAA ATATCGTGTT GGCTGATGAG CCAACAACGA CCGAAGCGCC TTCATTGCAA TGCGTTGTTG CTCCTCCTGT GTCTCGTTCA TTCGAAGACC GTGAGGCATT AACCGGCATA TCAGACGATC AAATTGTTAT CATTAGTGAT CACTCCAGCG TTGCTTACAA TAATCAAGCT GAGTTTTCGG GTGATGTCAG TTTCAGCCAA GGACTTCGTC ATATTGCGGC TGATAACGCT GTATTAGATC AAAAAGAACA ACGCTTAAAT GCAGACGGTA ACCTTATCTT TAAAGATGAG TTATTTACCG TTACGGCAGA TACCTTAGAA GCCCAGATGA GCACCAATAA CGCCACCCTA AAAGGCGCTC AATATTGGCT ACATGGGCAA CAAGTGCATG GCGATGCTGA AAAACTACAG ATCACTTCAG ACAATAATCT ATTGCTAACA AAAACCAACT TCACTACCTG TCCTCCTGGT GACGAATCAT GGTTACTCGA AGCTGACATG ATCAAAATTG ACAGCAAAGA AGAATGGGGT GAAATTTGGA ATGCCAAGCT GCGTATTGCC AATATTCCAG TGTTATATAT TCCGTATATG ACTGTACCTG TATCAGATAA GCGTAAAACT GGTTTCTTAT TCCCAAGTTT TAGTACCAGC ACCACTAACG GTGTAGAAGT TAGTACTCCG TATTATTGGA ATATCGCGCC AGAGTTTGAC TTAACTTTCA CACCAGACTT CATGTCTTCG CGTGGGCTAT ATACCAAAAC AGAGTTTCGC TATCTTGCTG GAGAACAGCA AAATGGTCAG TTCAATGTTG AATATTTAGG CAGCGATAGT AAGCTAACAT CTAATGCTGA CCGTTATTTG TATCACTGGA GCCATCAAGG CGCAGTTAAC AAAAACTGGC GAGTGAGATC AGACTATACC GATGTGTCCG ATAACAATTA TTTCAACGAT TTAAATTCTG ACGTTAATCA ATCAACCGAT AACCAATTAT CACGGATCGG TGAAGCCAGT TATTTTGAAC GCGACTGGGA CTTCAACATG CGCGTGCAAG ATATTAAAGT GCTTGGCGAA GATGAAAAAC CATATCAAGT AATGCCACAG TTAAACTTTA ATTATCGTTC TGCAGACATT TTTAACACTA TCGATTTTAA ATTTAATTCA GAACTGACCA ATTTCCGCCA TCAAGATAAC GAATATAATA CCGCAACCCG CTTACATTTA GTGCCAAGCT TAATTTGGCC GATACAAGGG CCTGCAGGTT CATTTACCAG TGAAGTTAAA TTACTGCAAA CTCAGTATTG GCAGCAAAAT ATAGACGAAG ACTCAACATT AAACGACAGT ATAAGCCGTA CGATCCCGCA AGCGCGTTTA CATGGCCAGG TGAATTTTGA GCGAGCAACC CAATTGTTTG ATGAACAATA CCGTCAAACC CTGGAACCTC AAATTCAATA TCTTTATGTC GGCTATGAAG ACCAATCCAA TATTGGTATT TATGACACCG CACAATTGCA AGAAGACTAT TATGGTTTGT TCCGCGATCG CCAATATTCA GGCTTAGACC GTGTTGCAGA TGCCAACCAA TTTACTTTAG GTTTTACTAC TCGTTTATTT GATCAAACTA ACCGCGAAAA ACTCAAGTTT AGCGTAGGTC AAATCATGTA TTTAGAAGAC TCTAAAGTCA GTATTGACGA TACGTACGAA GAAACGGCCC AGTCAACATC GGTATTAGCG GCTGAATTAG ATGCCCAATT ATACAACGAT TGGTTTGTGA GCGGTTCAGT GCAACACGAC ACAGAAACGG GTGAAAACAA AAAGAATGAA GTCACTTTAG ATTATCGTCC AAGTAGCGAC CGATTATTGC AGTTAAGCTA CCGATATGTA CCCGACTTAT TAAATACTAA CACCAATGAC CAAGTTGATA TTTCCCAAGC CGGCGTACGT ACCTCGTGGC CTATTAGTGA CAACTTATAC TTTGTCGGCA ACTACTATTA CGATCTCAAT GAATCTCGTA ATATTGAAAC TTACACAGGC GTACAATATG AGTCATGTTG CTGGGCATTG CGCTTAAGTT ATCATTATCG TATCAAAACC AACTATGACG ATGATTTATC AGAAAGCATT GATGGACGCG AAGAGTTTGA AAGCGGTGTT TACCTAAACT TTGTCATTAA AGGTTTAGGA GGTTCAGGTC CGTTAGGGGT AGACGACATG TTAAATGAAG GCTTATTTAA CTACCGTAAA CCACTTTACT TGAGGAATTA G
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Protein sequence | MQIRYFLALS LLPNIVLADE PTTTEAPSLQ CVVAPPVSRS FEDREALTGI SDDQIVIISD HSSVAYNNQA EFSGDVSFSQ GLRHIAADNA VLDQKEQRLN ADGNLIFKDE LFTVTADTLE AQMSTNNATL KGAQYWLHGQ QVHGDAEKLQ ITSDNNLLLT KTNFTTCPPG DESWLLEADM IKIDSKEEWG EIWNAKLRIA NIPVLYIPYM TVPVSDKRKT GFLFPSFSTS TTNGVEVSTP YYWNIAPEFD LTFTPDFMSS RGLYTKTEFR YLAGEQQNGQ FNVEYLGSDS KLTSNADRYL YHWSHQGAVN KNWRVRSDYT DVSDNNYFND LNSDVNQSTD NQLSRIGEAS YFERDWDFNM RVQDIKVLGE DEKPYQVMPQ LNFNYRSADI FNTIDFKFNS ELTNFRHQDN EYNTATRLHL VPSLIWPIQG PAGSFTSEVK LLQTQYWQQN IDEDSTLNDS ISRTIPQARL HGQVNFERAT QLFDEQYRQT LEPQIQYLYV GYEDQSNIGI YDTAQLQEDY YGLFRDRQYS GLDRVADANQ FTLGFTTRLF DQTNREKLKF SVGQIMYLED SKVSIDDTYE ETAQSTSVLA AELDAQLYND WFVSGSVQHD TETGENKKNE VTLDYRPSSD RLLQLSYRYV PDLLNTNTND QVDISQAGVR TSWPISDNLY FVGNYYYDLN ESRNIETYTG VQYESCCWAL RLSYHYRIKT NYDDDLSESI DGREEFESGV YLNFVIKGLG GSGPLGVDDM LNEGLFNYRK PLYLRN
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