Gene Sfri_2953 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2953 
Symbol 
ID4279858 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp3547074 
End bp3547742 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content38% 
IMG OID638135773 
Producttype IV pilus assembly PilZ 
Protein accessionYP_751631 
Protein GI114564117 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones42 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAACGC CAGTAAGTGC TTCGTTGTAT GCTGATCTTC GCCTAATTGA CATTGGTATG 
GAATTGTTCG TTGAAATTCA TTTTGCCAAT GGTAAAACAG TGCAGTCACG TTCGAGCTTA 
ATTGGTTATC AGGTTGGGCG GTTTATCTTG ATTGAGTATC CCAATAAAGG TTTTTCTGAG 
GCTTATCAGC ATATGCTAGT GAACGCTGAA ATTGTGGTAA GGGCGATGAC GAATAGCGGT 
TTTAAAGACA TTGTTGCTTT TAAATCGACC ATATTCTCTG TGGTTAATCA ACCTATTAGA 
ATGCTGTGCA TTAGCGTGCC TAAAACTATC ATCAAGAAAA AAGTCAGAGA TCAGTTGCGA 
GTTAATATCG AGCAAGATGT GTTTATTATG CACAATGACA ATAAAATCAG TGCAAAAATG 
CTCGACTTTT CTTCTACTGG CTGTTTGCTT ACGGTAGACT CCAAAACGGT GAGTATTGAA 
CAAGGCGAAG AGATACATGT GGCTATCTCG ATTAACACTG ATCTTTCAGG GATTTTAACG 
GGTAGCATGG TTAAAGTTCA AAACATTGAA GGTGTATTGA ATATTGGGGT GAAGTTTTCA 
GATGAGCATC CACAATTAAA AGATAATATT TTTAGTTACT TTTTAGTGAG TTCAACCAAA 
AAGCCGTGA
 
Protein sequence
MTTPVSASLY ADLRLIDIGM ELFVEIHFAN GKTVQSRSSL IGYQVGRFIL IEYPNKGFSE 
AYQHMLVNAE IVVRAMTNSG FKDIVAFKST IFSVVNQPIR MLCISVPKTI IKKKVRDQLR 
VNIEQDVFIM HNDNKISAKM LDFSSTGCLL TVDSKTVSIE QGEEIHVAIS INTDLSGILT 
GSMVKVQNIE GVLNIGVKFS DEHPQLKDNI FSYFLVSSTK KP