Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_2803 |
Symbol | |
ID | 4279709 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 3373869 |
End bp | 3374702 |
Gene Length | 834 bp |
Protein Length | 277 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 638135622 |
Product | MscS mechanosensitive ion channel |
Protein accession | YP_751482 |
Protein GI | 114563968 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0668] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAACATA TAGAAGGTTT AGATGCTTTA GTGGAGCAGG CACCTGAGTT TTTGATGACT TATGGTCTTA AAGCGCTAGC TGCTATTGTT ATTTTTCTCA TCGGTAAGTA TTTTTCCGGT GTAGCAAAAC GCATAACAAC CAAATTACTG ACTAATCGTA AAGTGGACGC AACAGTCGTT TCGTTTGTGG CAAACTTAGC GTGGATGTTG GTCTTTGTAT TTACTATTGT CGCCACGCTT GGTCAAGTTG GCGTGCAAAC AGCGTCACTA GTTGCTGTTA TCGGTGCCGC GGGTTTAGCT GTTGGTTTAG CGTTACAAGG TTCACTTTCG AACTTTGCAT CAGGCGTATT GATGGTGCTT TTCCGTCCAT GCCGCGTAGG TGACTTTATT GAAGCCGCTG GTGTTGCCGG TGTCGTTGAT GAGATTACGA TTTTCTCAAC ACGTTTACGT ACTGGTGACA ACAAAATGAT TATCGCGCCT AACTCAGCGA TTATGAATGG CACTATCACT AACTACTCAG CACTAGAAAA GCGTCGTATC GATTTAACTA TTGGTGTTTC GTATACAGCT GACATTGCTA AAACTAAGAA GGTATTAGCG GATATTTTAG ATAACAACCA GTTTGTGTTA AAAGATCCTG GTTATACTAT TGGTCTAGCT GAGCTTGCTG ATTGTTCAAT TAACTTTGTC GTACGTCCGT GGGTTAAAAC ACCAGACTAT TGGACTGCGC GTTTTGAATT ACTTGAGCAA ATCAAGAATG CATTAGATGC TGCTGAGATT GAAATTCCAT TCCCACAAAT GGATTTACAT GTGAAAGAAG TTCCAGCAAA ATAA
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Protein sequence | MEHIEGLDAL VEQAPEFLMT YGLKALAAIV IFLIGKYFSG VAKRITTKLL TNRKVDATVV SFVANLAWML VFVFTIVATL GQVGVQTASL VAVIGAAGLA VGLALQGSLS NFASGVLMVL FRPCRVGDFI EAAGVAGVVD EITIFSTRLR TGDNKMIIAP NSAIMNGTIT NYSALEKRRI DLTIGVSYTA DIAKTKKVLA DILDNNQFVL KDPGYTIGLA ELADCSINFV VRPWVKTPDY WTARFELLEQ IKNALDAAEI EIPFPQMDLH VKEVPAK
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