Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_2548 |
Symbol | |
ID | 4279456 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 3051258 |
End bp | 3052430 |
Gene Length | 1173 bp |
Protein Length | 390 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638135342 |
Product | PepSY-associated TM helix domain-containing protein |
Protein accession | YP_751228 |
Protein GI | 114563715 |
COG category | [S] Function unknown |
COG ID | [COG3182] Uncharacterized iron-regulated membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.023404 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAAAAC TTAGTAATAA ATTTTGGTTT AAGCTTCATG GCTGGTTTTC ATTGCCCGTA TGGATAATTT TTTGTTTCGT GTGCCTCACA GGAACAATTT CAGTGGTAAG TCATGAATTA ACCTGGCTTA CAAATCCTGA CTCGAGGGCA AGTAACCCGC AAAATCTGGC AGAAAAACCG ATGTCAGAAC TCGTTGAAAT TGTGCAACAA GCGCACCCCA CAGCAAACAT CACCACAGTG ATGAGCTTTG AGTCTTATCT GGTTAATGCG GTTATTTTTA ACGATAGCGA TGCGCCTTTT GCCATTGCTT ATGTCAATCA ATACACCGGC CAAATACAAG CAATTAATCT TGGCATGACC TTCACTAATT TTATGCGCTC ATTACACGGT TGGTTACTGT TTCCATGGCA TGTTAATTAC AGTGTCGGCT ATTACATTGT CTGTTTTATG GCAATTGTGA TGTTGGGTGC ATTGGTTTCT GGACTGGTGA TTTATAAAAA GTTCTGGCGT TCATTTATCC AGCCAAAATT ACGTTTAAAT CAAGGTAAAA AAACATTGCT TGCAGATCTA CATCGATTGG CAGGAGTGTG GTCAATGTGG TTTTTAATGC TTATGAGCAT TACGGGTTTA TGGTATTTAA CACAAGCTAT TATGTGGCAC AACCACATAG ATTTGGAGCC ACACGCGCCA TTAATTGAAG CAAGCCAAGT GCCTACATCA GCAAACGATG CTCCCATTAG ACCGTATACG TTATCTAATG CGCTGCAAGT AGCCGAGCAA AAATTCCCGG GCTTTAAAAG TACCTACATT ATGCTTCCAG AGCACAATCG AGATACTTAT AAAGTGTATG GCCAGGGAGA TCATATTTTC TATGATCAGT ATGCTTATGG TGTGACAGTG AATCCATGGA GCGGCACTAT TGAAAGTGAA AGATCGCCAG CGGCAATGAC AACCTTACAA ACCCTATCGC ATATTGCTGA TCCACTGCAT TACGGCACAA TAGGTGGTTT GTGGACCAAA GTGATTTGGT TTATCTTCGG TATTTTTCTA ACGGGAATGT CTATCACAGG ATTTTTAATG TGGGGAAGTC GAACCGTAAA AGCCGGCAGA ACCGACCTAG ATGCTCCGTT GGCAACACAC AGCCCACAAC TTGTCGAGCA GGAAGGTAAC TAA
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Protein sequence | MAKLSNKFWF KLHGWFSLPV WIIFCFVCLT GTISVVSHEL TWLTNPDSRA SNPQNLAEKP MSELVEIVQQ AHPTANITTV MSFESYLVNA VIFNDSDAPF AIAYVNQYTG QIQAINLGMT FTNFMRSLHG WLLFPWHVNY SVGYYIVCFM AIVMLGALVS GLVIYKKFWR SFIQPKLRLN QGKKTLLADL HRLAGVWSMW FLMLMSITGL WYLTQAIMWH NHIDLEPHAP LIEASQVPTS ANDAPIRPYT LSNALQVAEQ KFPGFKSTYI MLPEHNRDTY KVYGQGDHIF YDQYAYGVTV NPWSGTIESE RSPAAMTTLQ TLSHIADPLH YGTIGGLWTK VIWFIFGIFL TGMSITGFLM WGSRTVKAGR TDLDAPLATH SPQLVEQEGN
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