| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2193 |
|---|
| Symbol | |
|---|
| ID | 4279105 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 2622937 |
|---|
| End bp | 2623836 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638134988 |
|---|
| Product | transcriptional regulator, LysR family protein |
|---|
| Protein accession | YP_750877 |
|---|
| Protein GI | 114563364 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.000418662 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGAG CCAAATCAAC CCTAGAACAA TGGCGAATTG TCCAAGCTGT CGTTGATTTT
GGAGGTTATG CTCAGGCTGC AGAAAAACTC AATAAGAGTC AATCATCGCT AAACCATGCA
GTGGCAAAAC TGCAGCATCA ACTGGGTATA AACTTACTCG AAGTCAAAGG TCGCAAAGCC
TATTTAACCG AGCAAGGTGA AGTGTTATTA CGTCGTTCTC GTCATTTAAC CCAATCGGTT
GAAGAGCTTG AACAACTCGC CAATAATTTA GGTCAAGGCT GGGAACCTAA CCTAACGATC
GCCAGAGAAA TCATTTATCC TATGGACACG TTAGTGGCAG CTCTAGACGA ATTTTTACCA
CTAAGTCGTG GTACAAGGGT AACGATTATC GACTCGGTGA TCACCGGCAC TCATGAACTT
GTGCTTAATA ATGAAGTAGA CATTGCTATT TGTGCTACAC CACCTAAAGG TCATATTGCA
GAGCCATTAT GTGAATCAAA TTTTGAACTT GTGTGCCATC CAGACCATCC GCTTGCGCAA
TTAGAACGCA TAGATGATGA CAAGCAATTA GCCCAACATT TACAAATTGT GATTAAAGAT
ACGGGAATAA ATGCAATCAA TGATATTGGT TGGCTTAAAG CGGAACAACG TTGGACTGTA
TCGAACTTTC ATGAAGCAAA ATCCATTTTA GCGCGCAACA TCGGTTTTTG TTGGATCCCG
AACTTTGTTG TGCAGCAAGA ACTGCAAAAT AAACAACTCA TCCGCCTGCA TTTACGTGGA
GGTAATAATC GAAAAGCAAT ATTGAATCTG GTTGTCCCTA ATAGAGATCA GCAAGGCCCT
GCCTGTAAAT TATTAGAAAG CTTAATGTTA AAACAGCATA ACTTACCTTT TAATGGTTAA
|
|---|
| Protein sequence | MSRAKSTLEQ WRIVQAVVDF GGYAQAAEKL NKSQSSLNHA VAKLQHQLGI NLLEVKGRKA
YLTEQGEVLL RRSRHLTQSV EELEQLANNL GQGWEPNLTI AREIIYPMDT LVAALDEFLP
LSRGTRVTII DSVITGTHEL VLNNEVDIAI CATPPKGHIA EPLCESNFEL VCHPDHPLAQ
LERIDDDKQL AQHLQIVIKD TGINAINDIG WLKAEQRWTV SNFHEAKSIL ARNIGFCWIP
NFVVQQELQN KQLIRLHLRG GNNRKAILNL VVPNRDQQGP ACKLLESLML KQHNLPFNG
|
|---|
| |