Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_2174 |
Symbol | |
ID | 4279086 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 2600147 |
End bp | 2602687 |
Gene Length | 2541 bp |
Protein Length | 846 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638134969 |
Product | electron transport complex protein RnfC |
Protein accession | YP_750858 |
Protein GI | 114563345 |
COG category | [C] Energy production and conversion |
COG ID | [COG4656] Predicted NADH:ubiquinone oxidoreductase, subunit RnfC |
TIGRFAM ID | [TIGR00148] UbiD family decarboxylases [TIGR01945] electron transport complex, RnfABCDGE type, C subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.234957 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCTAACGT TATTAGAGCA ATTAGATAAA GGTACTTTGT GGCGCTCTCC TGGCGGGATC CATCCACCTG AACTTAAATC ACTTTCCAAT CAAAGCACCA TCGCATCTTT GCCACTGCAA TCGCGATTTG TGATACCGGT TCCTCTTGTT GGTCAACAAG CGACCTTGAG TGTCAAGGTC GGCGACTCGG TCTTAAAAGG ACAACCACTC ACTGAAGGTG CTGGTTTTAT TTATTTACCC GTTCATGCTC CTACTTCAGG GACCGTTGTC GCGATTGAGC AACATGGTAG CAACCATGCC TCATCATTGC CCGTGTTGAG TTGCATTATC GAAGCTGATG GTCTTGATAC TTGGTGTGAA CTTACCTCAA GTAAAATTGA ACAACTGTCC AAAGGCGATA TTTTAGCCAA AATAAAGCAA GCAGGTATTG CAGGAATGGG CGGTGCGGCG TTTCCAAGCC ATGTCAAACT CAATCCAGCG AGTGAAATCG ATTTAGTCAT TATTAATGGA GTAGAGTGCG AACCCTACAT TAGTGCTGAC GATCGATTAA TGCGTGAATT CAGTGATGAA ATATTAACGG GTATTAGTAT TATTCATCAT TTGCTTAACC CACAGCGTAT TATCATCGCC ATTGAAGATA ATAAACCTGA AGCGGCCCAA GCAATGGAGT CTGCTATTCG TCGCAGTTCA TTGCCTAACG ACATGATCCG CGTCACCGTT ATTCCGACTA AGTACCCTTC TGGTGGCGAA AAACAACTTA TTCAAATTAT TACTGGCAAA GAAGTACCCA GTGGCGCCAT TCCTGCTCAA CTTGGTATTG TGGTGCATAA CGTCGGCACA GCCTATGCAA TTCAAGAAGC GGTATTACAA GGCAAACCAC TCATTGAACG AGTGGTGACG TTAACCGGTG AATCCATCGG TAAACCCGGA AACTATTGGC TTAGAATAGG CACAACAGTT GAAGATGCCC TTAGTCAAGT CAGCTTCCAG CCAGAAAGTT CACAAAAAGT CATCGTTGGC GGCCCCATGA TGGGATACGC ATTAGCCGAT CTTGATGTAC CTATATTAAA AGGCACCAAC TGTTTATTAA CACCAAGCCA AGCAGAAATA GCCCCAGATC CAGATGAAAA AGCCTGCATT CGTTGTGGTG AGTGTGCAGT CGCTTGCCCC GCATTATTAT TACCGCAACA ACTATTCTGG CACGCAAAAG CCGAAGAATA TGACAAAGCT GCTAGTTTCA ATTTAAAAGA TTGTATTGAA TGCGGTTGTT GCAGCTACGT ATGCCCAAGT GACATTCCTT TAGTTGAATA TTATCGTGTC GCAAAATCAG CATTGAAAAA TGCTGCTGAA GAAAAGCTAC AAGCTGAACA AGCAAAAATT CGCTTCGAAA CACGCTTGCA ACGACTTGAA GATGAAAAAA ATGCTCGCGA AGAAAAGTCA AAACAAGCAG CCGCTAAACG TCAAGCGAAT ATGAAATCCG GTGATAAAGA TGCGGTAGCA GCTGCAATGG CACGCATCGC TGCTAAAAAA GCACAAGCAG CAGAAGGCAT CACTGCTGAT CCTGCGGCAA CAACACCTGA TACCACTACA ACAAAAGCAG CAATAGACGC TACCAGCGCG AAGAAAACAG CGGTTAATGC TGCGATTGAA CGCGCGAAAG CTAAAAAAGC CGCCTTGGCT ACTCAGTCTC AGAAAGATAA TCAAAGTGAT GTTGCTACGG TAACAAATGA TATGCCTGTC GACACCATCG ATCGCGCCAA TGACAAAAAA GCACAAATTG CAGCTGCCAT TGCCAGAGCT AAAGCCAAGA AAGCGGCATT AGCTAATGAA TCTGCCGAGA AAAATGACGT AGACGCCGAA CAGCCTAGCA ATACCGTAAA CGAAGTTAGT CCGGTAAATG AAACGGCTAC AACAAGTGTA GTAGACCCGG CCGATGACAA AAAAGCTAAA ATTGCTGCTG CCGTTGCCAA AGCGAAAGCC AAGAAAGCAG CATTAGCTGG TGATTCTACC GAGAAAAATG ACGTAGACGG TGATCAGACT CGCGATACTA TAAGCAAAGT TAATCCGGGA ATCGAAGTAG ATACAACTAT TACAGCAACC TCAGTCGATG ACAAAAAGGC TAGAATTGCT GCTGCCGTTG CCAAAGCGAA AGCCAAGAAA GCAGCATTAG TTGGTGATTC TACCGAGAAA AATGACATAG ACGGCGATCA GACTCGCGAT ACGGTAAACG AAGTGAACCG AGCAATCGAA ATTGATACAA CAATTGCAGT AACACCTGTC GATGACAAAA AGGCTAGAAT TGCTGCCGCT GTTGCTAAAG CGAAAGCCAA GAAAGCGGCA TTAGCTAGTG ATTCTAGCGC GACAAATGAC GTAGACGGAG TTCAGACTCG CGATACGGTA AACGAAGTGA ACCCAGCAAT CGAAATTGAT ACAACAATTG CAGCAATCCC AGTTGATGAC AAAAAGGCTA GAATTGCTGC CGCGGTTGCT AAAGCGAAAG CCAAAAAACT CGCTAACAGT GCTAAGCAAG AGGAACTATA A
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Protein sequence | MLTLLEQLDK GTLWRSPGGI HPPELKSLSN QSTIASLPLQ SRFVIPVPLV GQQATLSVKV GDSVLKGQPL TEGAGFIYLP VHAPTSGTVV AIEQHGSNHA SSLPVLSCII EADGLDTWCE LTSSKIEQLS KGDILAKIKQ AGIAGMGGAA FPSHVKLNPA SEIDLVIING VECEPYISAD DRLMREFSDE ILTGISIIHH LLNPQRIIIA IEDNKPEAAQ AMESAIRRSS LPNDMIRVTV IPTKYPSGGE KQLIQIITGK EVPSGAIPAQ LGIVVHNVGT AYAIQEAVLQ GKPLIERVVT LTGESIGKPG NYWLRIGTTV EDALSQVSFQ PESSQKVIVG GPMMGYALAD LDVPILKGTN CLLTPSQAEI APDPDEKACI RCGECAVACP ALLLPQQLFW HAKAEEYDKA ASFNLKDCIE CGCCSYVCPS DIPLVEYYRV AKSALKNAAE EKLQAEQAKI RFETRLQRLE DEKNAREEKS KQAAAKRQAN MKSGDKDAVA AAMARIAAKK AQAAEGITAD PAATTPDTTT TKAAIDATSA KKTAVNAAIE RAKAKKAALA TQSQKDNQSD VATVTNDMPV DTIDRANDKK AQIAAAIARA KAKKAALANE SAEKNDVDAE QPSNTVNEVS PVNETATTSV VDPADDKKAK IAAAVAKAKA KKAALAGDST EKNDVDGDQT RDTISKVNPG IEVDTTITAT SVDDKKARIA AAVAKAKAKK AALVGDSTEK NDIDGDQTRD TVNEVNRAIE IDTTIAVTPV DDKKARIAAA VAKAKAKKAA LASDSSATND VDGVQTRDTV NEVNPAIEID TTIAAIPVDD KKARIAAAVA KAKAKKLANS AKQEEL
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