Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1986 |
Symbol | |
ID | 4278898 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 2353623 |
End bp | 2354546 |
Gene Length | 924 bp |
Protein Length | 307 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 638134773 |
Product | diguanylate cyclase |
Protein accession | YP_750670 |
Protein GI | 114563157 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGATCACCA CGCTAAAGAG TAAACCCAAC AGTCATACAG CATTCGATTA CTCTCCGGAT AATTTTCAGT GCGGTGCTTT AGTCACCAAT GCATCAAACA TTATTATTTA TGTAAACACA TACTTTACCG ACGAACTATT GTGGAAGCCG GGGCAACTTA TTGGCAAAAA TGCTGATATC ATTTTCACCC AATCTTCCAG AATATTTTTT CAAAGTTATT TAATTCCAAC ACTTTTACAC GAACAAATTT GTGAAGAAAT GCAGCTGATT ATTTTTAATG CTGAAGGGTT GCGAATTCCG ATAACGGTAA ATGCTCGTTT AAGCGATGAC GGCTGTATTT ATTGGAGTTT TTTCAATGCC TCCAAAAGAG ACCAACTTTA TGATGAGTTA ATAAAAACAA GAGAAAAACT TGAGGAGCAA GCTGAAAAAT TAAAATTACT TGCTTCAACT GATGAGTTAA CGCAGTTATT AAATAGAAGA GAAATGAAAT ATCGTAGTAC GTTAGCACTT GAACAAGCGA CTCGATCGGA ACAATCTGTT GGTTTATTAT TGTTAGATAT CGATCATTTT AAAATTATTA ATGACAGCTT TGGTCATTTA GAAGGCGATC GAGTACTGAA AGAGCTCGGG CATATTTTGA AGAATTTTTG TAGACAAACC GATCTTGTCT CTCGCTTTGG CGGCGAAGAA TTTTTGATAT TGCTACCCGA TACGAACAAA AGTGATACTT TATTATTTTG TAACAGACTC CAAGACAGCA TCTCGCAAAT TAAAGTGGGT GACGACGTAC TAACTGTCAG TATTGGGGTC AGCATTTGTG ATGATAAAAG ACAATTTACA GATTTATTTA CTCAAGCGGA TAAAGCTATG TATAAAGCAA AAGCACTTGG AAGAAATAGA ACTGAAATTT ATTGTTTGGA TTAA
|
Protein sequence | MITTLKSKPN SHTAFDYSPD NFQCGALVTN ASNIIIYVNT YFTDELLWKP GQLIGKNADI IFTQSSRIFF QSYLIPTLLH EQICEEMQLI IFNAEGLRIP ITVNARLSDD GCIYWSFFNA SKRDQLYDEL IKTREKLEEQ AEKLKLLAST DELTQLLNRR EMKYRSTLAL EQATRSEQSV GLLLLDIDHF KIINDSFGHL EGDRVLKELG HILKNFCRQT DLVSRFGGEE FLILLPDTNK SDTLLFCNRL QDSISQIKVG DDVLTVSIGV SICDDKRQFT DLFTQADKAM YKAKALGRNR TEIYCLD
|
| |