Gene Sfri_1906 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1906 
Symbol 
ID4278818 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp2257869 
End bp2258456 
Gene Length588 bp 
Protein Length195 aa 
Translation table11 
GC content38% 
IMG OID638134690 
Producthypothetical protein 
Protein accessionYP_750590 
Protein GI114563077 
COG category[R] General function prediction only 
COG ID[COG1896] Predicted hydrolases of HD superfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.233056 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTCATT TATTTGCCCA TTTATCTCGG ATGAAACTGA TCCAACGTTG GCCGTTAATG 
CATAATGTAC GCCGCGAAAA CGTTCAAGAG CATTCACTAC AAGTGGCGAT GGTCGCTCAC 
GCTTTAGTGA TTATCAGTAA TAAAAAATTC GCTACCAACT TAGACGCTAA TGAAGCAGCA 
ACCATTGCCA TCTATCATGA TGCTAGCGAA ATTTTAACCG GCGATTTACC TACACCAGTA 
AAATACTTTA ATAAAGAAAT TGAAGCCGAA TATAAAAAGA TTGAAGCCAT TGCTGAACAG 
AGAATGTTAG AAATGGTGCC TGATGAGTTT AAAGACGATT ACCGCAGCCT ATTTATCAGT 
GAAGCAGCGG ATCCACAATA CAAAGCCATT GTGAAAGCTG CTGATACTCT CTGCGCATAT 
TTAAAGTGTT TAGAAGAACA AAAAGCCGGT AACAGTGAAT TTAATAGTGC CCGTAAACGT 
TTAGAACAAA TGTTAGACGA CAACCCTAAC CCGGCAGTAA GTTATTTCCG TGATTGTTTT 
ATTCCAAGTT TCACCTTGAA TTTAGACGAA ATTAATCAAA TGTTGTAA
 
Protein sequence
MSHLFAHLSR MKLIQRWPLM HNVRRENVQE HSLQVAMVAH ALVIISNKKF ATNLDANEAA 
TIAIYHDASE ILTGDLPTPV KYFNKEIEAE YKKIEAIAEQ RMLEMVPDEF KDDYRSLFIS 
EAADPQYKAI VKAADTLCAY LKCLEEQKAG NSEFNSARKR LEQMLDDNPN PAVSYFRDCF 
IPSFTLNLDE INQML