Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1772 |
Symbol | |
ID | 4277551 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 2080049 |
End bp | 2081086 |
Gene Length | 1038 bp |
Protein Length | 345 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638134556 |
Product | transcriptional regulator, LacI family protein |
Protein accession | YP_750460 |
Protein GI | 114562947 |
COG category | [K] Transcription |
COG ID | [COG1609] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.297999 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCATCTA AAGCGACTTC TATTGATATA GCTTACCGTG CAGGCGTGTC GCAATCGACT GTGTCTCGTG CGTTAAGAAA CAGTCCGTTG GTAAATTTAG AAACGCGACA GCGTATCCAA GCCATTGCAA AAGAACTCAA TTATAAAGTC GATAAAAATG CCAGTAACTT GCGCATGCAA AACAGCCATA CGTTAGCATT GCTAATTTGT GAAGATCCAA CTAATGATGA GTCGATGATC AACCCATTTT TCCTCTCTAT GTTGGGTTCG ATCACTCGAG CAACCGCCCG TCAAGGTTAT GATTTATTGG TGTCATTTCA GCAGCTTTCA ACTGATTGGC ATGCAGATTA TGAAGACAGT AATAAAGCCG ATGGTATTAT TTTATTAGGC TATGGCGATT ATATGGATTA TGCCCATAAG CTTGATAAGC TTATCGAAAA AAATACTCAT TTTGTTATCT GGGGAGCTGA GCATAACAAT AAAGCGGTGT TGTCTATTGG TTGCGATAAT CATCAAGGTG GTTTTGTGGC CACGGAACAT TTGCTTGGGT TAGGGCATAA ACACATTGCT TTTTTAGGTG ACTCATCAAG TCGCAGCCCT GAATTTCGCG ACAGATATTT AGGTCATGTT GATGCTTTAC AATCTACCGG TATCGAGGCC GACACACAGT TACAGCATGA CGCTATTAAT ACCGAAGCCT CTGGCTATCA TGCCGCCAAC GTATTATTAG ATAGCGGCGT GACATTTGAT GCTATTTTTA CTGCGAGTGA TCTAATTGCG ATAGGGGCGA TTCGTGCATT GAAAAAGCGC GGTGTTTTAG TTCCGGAGCA AGTTGCTGTA GTGGGATACG ATGATATTCC GGTGGCCAGT TTTGCCAATC CGGCGTTAAC AACCATAAAG CAAGATACTC AGTTCGCAGG TGAAATACTT GTCGAAAGTG TGTTGAAGTT AATCCGTGGT CAAGAAGTTA GCCAGCGATT AATCAAGACC CATTTAGTGG TACGTAGTTC ATGTGGTGCA AATGTAGAAG ATAATTAA
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Protein sequence | MASKATSIDI AYRAGVSQST VSRALRNSPL VNLETRQRIQ AIAKELNYKV DKNASNLRMQ NSHTLALLIC EDPTNDESMI NPFFLSMLGS ITRATARQGY DLLVSFQQLS TDWHADYEDS NKADGIILLG YGDYMDYAHK LDKLIEKNTH FVIWGAEHNN KAVLSIGCDN HQGGFVATEH LLGLGHKHIA FLGDSSSRSP EFRDRYLGHV DALQSTGIEA DTQLQHDAIN TEASGYHAAN VLLDSGVTFD AIFTASDLIA IGAIRALKKR GVLVPEQVAV VGYDDIPVAS FANPALTTIK QDTQFAGEIL VESVLKLIRG QEVSQRLIKT HLVVRSSCGA NVEDN
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