| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1337 |
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| Symbol | |
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| ID | 4278011 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1590741 |
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| End bp | 1592648 |
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| Gene Length | 1908 bp |
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| Protein Length | 635 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638134112 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_750028 |
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| Protein GI | 114562515 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.018023 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATATTAT TGGTGTGTGC AATGAGCTGG CCGCTAATGT CTTGGGGGGC CAGTGACGCT
AATGCAAATG ACACTGGAAT GAATGGCGCC AATGTTAGCA ACAATAGTGA TAGCGCAACA
ATTACTGATA TCAAACAACA GTTAGCCACA TTAAACTTAC CACAACAACG AATTGATTTT
TTACTACAAC AGCTACGACA AAGTGCTCAA TGGCCGATTG AACAGCAAGG CCAGTTGTTG
CATTTGCTAG CAATAGAGCA AGAAGTTAAC AGTGATCTTG TCGCGGCAAT TGACAGTTAT
ACTCAGGCAA TTAAATTACT TACACCACAT CCTCTTAGTC AAGAACTGGT CAAAAGCTAT
CTCGAACGCT CATTCATACT TTACCTTCAA ACTAACGACA CCCAAGTTTA TTGCCCAGAT
CGTGAAGTGG CGATTACATT AGCCCGTCAG CTTGGAAACG TTGATATCTT GGCCGAAGTG
TTAGCTCAAA GCGCGTATTG TTATAATAAA CCAAGTGATT TTGGCGAAGG TCTGAAAAGG
TTAAATGAAG CATTAGCGTT AGCACAACAG CATCAATTAG GACTGAGCCG CCAAGCGATG
ATATTTAATG CCACCGCTGC TATCTATCGT GACAATGGTT TAAACCGTAA AGCCTATGAA
TATTTTAACA AAGCTTATGG CTTTTGGGAG CAAGCCCAAG ATAAACAAGA CATGTTTAAT
ATGTTGCATA ACATGGTGGG TGAATCGATT AAATTGGCCA TGTGGGTGGA AAATAAAGCC
CATTTAGCCC AAATGCAGCA GTTAGTTGAA CAATCGCCAG AGTTTGCTGA CTTTGATTTT
TTCTATCAAT TTAATACTGG CATTAGCTGT TGGGCCCAAG GTTTATTTCA AGAAGGTATT
GATCATTTTT TACGAGCATT AGCGGTGCAA GATACAACCC AAGAAAAATA CTTTGTCGAC
GCCACGCATG CATGGTTGGC ATTGAGTTAT TTTCGCCAAC AACAACCAAA TAAAGCTTTT
AAGTATGCTG AAATATTTTC TGGTTCGGCG ACTTATGACG GCCATTCCAA TGAACTGAAA
TTGATGATTG CTGCCATTAT TGATTACGCC AATGGGTCGA GTAATCTTGG TATGAATAAG
CTTTTGGATA CCATCGATTT ACAAAAAAAG AACTTTGCTA ATATTATTAA TAATGATGTG
GTTAATTCAT CATTAGACCA TAATCTTACC GTGGCTGAGT TCAATAATCG TCTGCTCGAA
AAGCAATTGG CAATCAATAA ACTGAATTTA GAGGCCGAAA TTGATTCTCA AAAAATTACT
AACTTATCAA TGGCAATCGC AGTGCTAATT GCATTGGTGT TATTGGTGGT GGTCATTTTC
TTGTGGCAAT CTCGCCGACA ATTTAAACGC CGCTCTCAAA CTGATTATTT GACGGGTATT
GCAAATAGAC GTCATACCTT TGAACAGGGT AAAAAGCGCT TTTATCAGGC TAAAAAACAT
AATCGATCAC TAGCCGTTAT TATGTTCGAT ATCGATAACT TTAAAGCCAT TAATGATCAT
TATGGTCATG ATATTGGCGA TTTAGCCATA AAAGCGTGTG GTAGACGAGC ACGCAATTGG
CTCAAGAAAA ACGATATTTT AGGTCGCATC GGTGGCGAAG AGTTTTTAAT TATTTTACCT
GATACAGAGC AAGCACAAGC CGTTGAAATA GCCGAACGAT TGCGAACCAG TATTGAGTCA
AACCAGTTTG TGTTTAACGA TGTTAAAATG AATTTCACTA TCAGTGTGTC TGTCGCGATG
TTAACCCCGC AAACTCATGA GCTTGTCGAC ATTATTAAAC AAGCCGATTT AGGCTTATAT
CAAGCAAAAG ACAACGGCCG TAATCAAGTC GTGGTTGTCG ATCATTAA
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| Protein sequence | MILLVCAMSW PLMSWGASDA NANDTGMNGA NVSNNSDSAT ITDIKQQLAT LNLPQQRIDF
LLQQLRQSAQ WPIEQQGQLL HLLAIEQEVN SDLVAAIDSY TQAIKLLTPH PLSQELVKSY
LERSFILYLQ TNDTQVYCPD REVAITLARQ LGNVDILAEV LAQSAYCYNK PSDFGEGLKR
LNEALALAQQ HQLGLSRQAM IFNATAAIYR DNGLNRKAYE YFNKAYGFWE QAQDKQDMFN
MLHNMVGESI KLAMWVENKA HLAQMQQLVE QSPEFADFDF FYQFNTGISC WAQGLFQEGI
DHFLRALAVQ DTTQEKYFVD ATHAWLALSY FRQQQPNKAF KYAEIFSGSA TYDGHSNELK
LMIAAIIDYA NGSSNLGMNK LLDTIDLQKK NFANIINNDV VNSSLDHNLT VAEFNNRLLE
KQLAINKLNL EAEIDSQKIT NLSMAIAVLI ALVLLVVVIF LWQSRRQFKR RSQTDYLTGI
ANRRHTFEQG KKRFYQAKKH NRSLAVIMFD IDNFKAINDH YGHDIGDLAI KACGRRARNW
LKKNDILGRI GGEEFLIILP DTEQAQAVEI AERLRTSIES NQFVFNDVKM NFTISVSVAM
LTPQTHELVD IIKQADLGLY QAKDNGRNQV VVVDH
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